DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and Lhx9

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:341 Identity:107/341 - (31%)
Similarity:163/341 - (47%) Gaps:34/341 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GGHLAHQL-PLHNHNHNQTGLQPSLVMNHHLDLDCHGHDV----IKKQRLSHCVGCGGQIHDQYI 66
            |||:...: .:...:..:..|.....:|        |.|.    :..::.:.|.||||:|.|:|.
Mouse    27 GGHIQGIMEEMERRSKTEARLTKGTQLN--------GRDAGMPPLSPEKPALCAGCGGKISDRYY 83

  Fly    67 LRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGT-KCDKCGNSFSKNDFVM 130
            | :|.|.:||..||||.||:..|:...|||.:||..|||.||.|.|.. :|.:|....|.::.||
Mouse    84 L-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVM 147

  Fly   131 RAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVL---EKSSQSSLTSSSVESNN- 191
            ||:..::|:.||.||.|.:.|..||.|.::|: .:||:...:.|   |...|.|.|..:.:|.. 
Mouse   148 RARDSVYHLSCFTCSTCNKTLTTGDHFGMKDS-LVYCRAHFETLLQGEYPPQLSYTELAAKSGGL 211

  Fly   192 NISSSNNNNT---NLSNNNHSSELG----SMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLN 249
            .:...|...|   .......|..||    :.:...:|:.:....||::|..||. |..|:||...
Mouse   212 ALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQ-KTKRMRTSFK 275

  Fly   250 EKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQMQQEKEGR 314
            ..||.|:::.:..|..|||...:||.:.|.|:.||::|||||.|.|.::..      ::||..|.
Mouse   276 HHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL------LRQENGGV 334

  Fly   315 KLGYGAMQGIPMIASS 330
            ....|.....|..|.|
Mouse   335 DKADGTSLPAPPSADS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 28/53 (53%)
LIM2_Isl 116..171 CDD:188760 20/54 (37%)
HOX 241..297 CDD:197696 23/55 (42%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 28/63 (44%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 20/58 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 8/24 (33%)
Homeodomain 268..324 CDD:459649 23/55 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 6/21 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397
Blue background indicates that the domain is not in the aligned region.

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