DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and Lhx8

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_034843.2 Gene:Lhx8 / 16875 MGIID:1096343 Length:367 Species:Mus musculus


Alignment Length:340 Identity:97/340 - (28%)
Similarity:147/340 - (43%) Gaps:73/340 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDK 118
            |..||.:|.|:|:|:| .||.||..||.|..||..|....:|:::|...:||.||.|.:||:|.:
Mouse    96 CSSCGLEIVDKYLLKV-NDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSR 159

  Fly   119 CGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEKSSQSSLT 183
            ||......|:|.|||..::|:.||.|.:|.|||..|:||||.:...| |:...|.:         
Mouse   160 CGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVL-CRVHFDCM--------- 214

  Fly   184 SSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVL 248
                        .:|....:.|.|..|..|::.       :.:.:...:|:       .|.||..
Mouse   215 ------------LDNLKREVENGNGISVEGALL-------TEQDVNHPKPA-------KRARTSF 253

  Fly   249 NEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQMQQEKEG 313
            ...||..::..:..:..|||...::|.|.|.||.|||:|||||.|.:.||..             
Mouse   254 TADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHV------------- 305

  Fly   314 RKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDFALHADLDSNG----AINTHT 374
                            || .|.|...:..:......||  .|.:.|..|.:..:|    |::::.
Mouse   306 ----------------SP-NHSSSAPVTAVPSSRLSPP--MLEEMAYSAYVPQDGTMLTALHSYM 351

  Fly   375 PAFQQLVNQMHGYDL 389
            .|.|||::....|.:
Mouse   352 DAHQQLLDSSPCYPI 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 22/53 (42%)
LIM2_Isl 116..171 CDD:188760 23/54 (43%)
HOX 241..297 CDD:197696 22/55 (40%)
Lhx8NP_034843.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..79
LIM1_Lhx7_Lhx8 95..150 CDD:188767 23/54 (43%)
LIM2_Lhx7_Lhx8 157..211 CDD:188769 23/54 (43%)
Homeodomain 247..303 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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