DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and lmo4a

DIOPT Version :10

Sequence 1:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_817093.1 Gene:lmo4a / 114412 ZFINID:ZDB-GENE-010702-1 Length:167 Species:Danio rerio


Alignment Length:139 Identity:54/139 - (38%)
Similarity:81/139 - (58%) Gaps:7/139 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK-- 115
            |.||||:|.|:::| .:.|..||..||||..|:..|.| ..|||.:.|...|:.||:||||..  
Zfish    24 CAGCGGRISDRFLL-FSMDRYWHTRCLKCSCCQAQLGEIGSTCFSKGGMILCRNDYIRLFGHSGA 87

  Fly   116 CDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDH--DVLEKSS 178
            |..||.|...::.||||:..::|::||.|:.|..:|:|||.|...: |.::|:.|.  ..|..|.
Zfish    88 CSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVN-GTIFCEHDRPGGALLSSH 151

  Fly   179 QSSLTSSSV 187
            .:.|.|:::
Zfish   152 LTPLQSNTL 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752 23/54 (43%)
LIM2_Isl 116..171 CDD:188760 20/54 (37%)
HOX 241..297 CDD:197696
lmo4aNP_817093.1 LIM1_LMO4 24..78 CDD:188772 23/54 (43%)
LIM2_LMO4 88..142 CDD:188773 20/54 (37%)
Blue background indicates that the domain is not in the aligned region.

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