DRSC/TRiP Functional Genomics Resources

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Protein Alignment tup and isl2

DIOPT Version :9

Sequence 1:NP_001286068.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_001159513.1 Gene:isl2 / 100306962 XenbaseID:XB-GENE-487556 Length:333 Species:Xenopus tropicalis


Alignment Length:364 Identity:191/364 - (52%)
Similarity:228/364 - (62%) Gaps:67/364 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 KKQRLSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRL 111
            ||..|:.|||||..|.|||||||:||||||||||||.||.|:|||:||||||||||||||||:||
 Frog    20 KKAGLAVCVGCGSHILDQYILRVSPDLEWHAACLKCAECSQYLDENCTCFVRDGKTYCKRDYIRL 84

  Fly   112 FGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHDVLEK 176
            |..:|.:|..:..:::.|||...:::|.:|||||.|:|:||||:|.:|||.. |.|..:|     
 Frog    85 FSARCPRCQGTLPRSELVMRVGERVYHTDCFRCSVCSRRLLPGEEISLRDQD-LLCGAEH----- 143

  Fly   177 SSQSSLTSSSVESNNNISSSNNNNTNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKP 241
                                     |||::...|.|        .|..||...          |.
 Frog   144 -------------------------NLSDSGRPSSL--------RSHIHKQTE----------KT 165

  Fly   242 TRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKTIQMKLQ 306
            |||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||:|.|| |
 Frog   166 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMK-Q 229

  Fly   307 MQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQPPWKALSDFALHADLDSNGAIN 371
            :||::...|.....:.|.||:|.||:||||.:....::||||||||||||||||.:|||.     
 Frog   230 LQQQQLNDKTSLQGLTGTPMVAGSPIRHDSAVQGSAVEVQTYQPPWKALSDFALQSDLDQ----- 289

  Fly   372 THTPAFQQLVN--------QMHGYDLNGMPI-LPPHPHS 401
               |||||||:        ...|.|:..:.. ||..|:|
 Frog   290 ---PAFQQLVSFSESGSLGNSSGSDIASLSSQLPDTPNS 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tupNP_001286068.1 LIM1_Isl 54..108 CDD:188752 45/53 (85%)
LIM2_Isl 116..171 CDD:188760 23/54 (43%)
HOX 241..297 CDD:197696 52/55 (95%)
isl2NP_001159513.1 LIM1_Isl 27..81 CDD:188752 45/53 (85%)
LIM2_Isl 89..143 CDD:188760 23/54 (43%)
HOX 165..221 CDD:197696 52/55 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 124 1.000 Domainoid score I5447
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 396 1.000 Inparanoid score I1912
OMA 1 1.010 - - QHG45829
OrthoDB 1 1.010 - - D403874at33208
OrthoFinder 1 1.000 - - FOG0002096
OrthoInspector 1 1.000 - - otm49254
Panther 1 1.100 - - LDO PTHR24204
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5473
SonicParanoid 1 1.000 - - X1777
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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