DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10602 and Lta4h

DIOPT Version :10

Sequence 1:NP_609916.5 Gene:CG10602 / 35146 FlyBaseID:FBgn0032721 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_032543.2 Gene:Lta4h / 16993 MGIID:96836 Length:611 Species:Mus musculus


Alignment Length:622 Identity:275/622 - (44%)
Similarity:384/622 - (61%) Gaps:34/622 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VVDPSSYSQP-DLITTEHSALNWKIDFAATKIQGSVLHRFKVLTANLDKILLDVRDINVTNATLL 140
            |.|..|.:.| .:..|:|..|...:|||...:.|:.....:....||..:.||.:|:.:....: 
Mouse     4 VADTCSLASPASVCRTQHLHLRCSVDFARRTLTGTAALTVQSQEENLRSLTLDTKDLTIEKVVI- 67

  Fly   141 AGGSELPINFFISDAVDDIGQKLTLELPSGTAKG-SLNVRIDYETSSSASGLQWLNPTQTLGKEH 204
             .|.|  :.:.:.::....|..:.:.||...:|. .:.:.|.:|||..:|.||||.|.||.||:|
Mouse    68 -NGQE--VKYTLGESQGYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKQH 129

  Fly   205 PYMFSQCQAIHARSVIPCQDTPAVKFTYDATVEHPSELTALMSAL-----IDKKEPGKTL--FKQ 262
            ||:||||||||.|:::||||||:||.||.|.|..|.||.|||||:     .|.::|.:.:  |.|
Mouse   130 PYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGEAPDPEDPSRKIYRFNQ 194

  Fly   263 EVPIPAYLVAIAIGKLVSRPLGENSSVWAEEAIVDACAEEFSETATMLKTATELCGPYVWKQYDL 327
            .||||.||:|:.:|.|.||.:|..:.||:|:..|:..|.|||||.:|||.|.:|.|||||.||||
Mouse   195 RVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSANEFSETESMLKIAEDLGGPYVWGQYDL 259

  Fly   328 LVMPPSFPFGGMENPCLTFVTPTLLAGDKSLADVVAHEIAHSWTGNLVTNKNFEHFWLNEGFTVF 392
            ||:|||||:||||||||||||||||||||||::|:||||:|||||||||||.::|||||||.||:
Mouse   260 LVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVY 324

  Fly   393 VESKIVGRMQGAKELDFKMLSNLTDLQECIRTQLNKTPELTKLVVDLSNCGPDDAFSSVPYIKGS 457
            :|..|.||:.|.|...|..|....:||..|:| ..::...|||||||.:..||.|:||:||.||.
Mouse   325 LERHICGRLFGEKFRHFHALGGWGELQNTIKT-FGESHPFTKLVVDLKDVDPDVAYSSIPYEKGF 388

  Fly   458 TFLRYLEDLFGGPTVFEPFLRDYLKKYAYKSIETKDFQSALYDYFIDTDKKDKLSAVDWDLWLKS 522
            ..|.|||.|.|||.||..||:.|:||::|:|:.|.|::|.||.:|  .||.|.|:.|||:.||.:
Mouse   389 ALLFYLEQLLGGPEVFLGFLKAYVKKFSYQSVTTDDWKSFLYSHF--KDKVDLLNQVDWNTWLYA 451

  Fly   523 EGMPPVIPNFDESLANVTKELASLW--------SSKSVAELADSAEIKTTISIHQLIDFLGKLIE 579
            .|:|||.||:|.:|.|....|:..|        ||.|:|:|.|       :|.|||.:||.::::
Mouse   452 PGLPPVKPNYDVTLTNACIALSQRWVTAKEEDLSSFSIADLKD-------LSSHQLNEFLAQVLQ 509

  Fly   580 SKDIVDLNEGKINLLESTYNLKSSKNAEVRFRLNRLIIRARLIKRLDEILEFANSNFRMKFCRPI 644
            .   ..|..|.|..::..||..:..|:|:|||..||.|:::..:.:...|:.|....||||.||:
Mouse   510 K---APLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEEAIPLALKMATEQGRMKFTRPL 571

  Fly   645 YRDLAGWPEAKPAAIRNFVNVKDQMMAVCSHTIEKDL 681
            ::|||.:.::...|:..:...|..|..|.:..:.:||
Mouse   572 FKDLAAFDKSHDQAVHTYQEHKASMHPVTAMLVGRDL 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10602NP_609916.5 Ribosomal_L13 15..>50 CDD:459856
leuko_A4_hydro 79..681 CDD:274120 272/618 (44%)
Lta4hNP_032543.2 leuko_A4_hydro 6..608 CDD:274120 272/618 (44%)
Blue background indicates that the domain is not in the aligned region.

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