DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL13 and Rpl13a

DIOPT Version :9

Sequence 1:NP_523598.2 Gene:mRpL13 / 35145 FlyBaseID:FBgn0032720 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_775462.2 Gene:Rpl13a / 317646 RGDID:628697 Length:203 Species:Rattus norvegicus


Alignment Length:33 Identity:10/33 - (30%)
Similarity:14/33 - (42%) Gaps:0/33 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 HLLGLQKPIYHPMNDCGDHVVLINTREIALPGD 69
            ||||....|.......|..||::....|.:.|:
  Rat    14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGN 46

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL13NP_523598.2 Ribosomal_L13 16..141 CDD:278969 10/33 (30%)
Rpl13aNP_775462.2 PTZ00068 6..191 CDD:240253 10/33 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0102
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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