DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL13 and mrpl-13

DIOPT Version :9

Sequence 1:NP_523598.2 Gene:mRpL13 / 35145 FlyBaseID:FBgn0032720 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_492067.1 Gene:mrpl-13 / 172479 WormBaseID:WBGene00008769 Length:205 Species:Caenorhabditis elegans


Alignment Length:172 Identity:61/172 - (35%)
Similarity:97/172 - (56%) Gaps:0/172 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLINTREIALPGDE 70
            ||.||..|:|.||:.|...|:.......|..:|.|..|||:||..|||||||:.|.::||:...:
 Worm    12 RVNQWLQFSRQWHVIDANQQDAELLGDKVARYLAGKHKPIFHPETDCGDHVVVTNCKDIAMHAFD 76

  Fly    71 WVKRVYFHHTGYPGGASWTLAWQLHEKDPTMVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEE 135
            |...:|..:..||...:...|||:|:.|...:...:||.|:..||.||..:||||||.|:::.|.
 Worm    77 WKHTIYKFNMEYPKSKADIPAWQIHDYDQCRIAFLSVYRSLGNNLLRRRHIQRLHLFPDEEMAEF 141

  Fly   136 ILQNVTNQIRTPRSIPQRLDHIDKETLENFPNIMDYPKDYIL 177
            :.:|:.:|:|..:.:.:|.|....|...|||.::.:...:::
 Worm   142 VRKNIGSQLRQVQGVVKRSDEYTAEERANFPRVVKFADKHVV 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL13NP_523598.2 Ribosomal_L13 16..141 CDD:278969 47/124 (38%)
mrpl-13NP_492067.1 Ribosomal_L13 22..137 CDD:278969 45/114 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159387
Domainoid 1 1.000 99 1.000 Domainoid score I4489
eggNOG 1 0.900 - - E1_COG0102
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H90894
Inparanoid 1 1.050 133 1.000 Inparanoid score I3177
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62551
OrthoDB 1 1.010 - - D1119705at2759
OrthoFinder 1 1.000 - - FOG0003171
OrthoInspector 1 1.000 - - oto20348
orthoMCL 1 0.900 - - OOG6_101118
Panther 1 1.100 - - LDO PTHR11545
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4169
SonicParanoid 1 1.000 - - X3602
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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