DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and Prdm16

DIOPT Version :10

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:XP_006539234.1 Gene:Prdm16 / 70673 MGIID:1917923 Length:1277 Species:Mus musculus


Alignment Length:1160 Identity:348/1160 - (30%)
Similarity:484/1160 - (41%) Gaps:339/1160 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 ELDIRDSG------GVYAKTPLQRGTRYGPFPMKLSHQPNDPQLAWKAHSRHYNGWLEPTEDVS- 202
            :.::|:|.      |::||..::.|.|:||:.:       .|:.|.|.....:...|..||..| 
Mouse    83 DFELRESSIPGAGLGIWAKRKMEIGERFGPYVV-------TPRAALKEADFGWEQMLTDTEVSSQ 140

  Fly   203 ---------------------------TWLKKIRSVQDDCIGEANLQSYINAGYLWYETNRYVNA 240
                                       :|||.|| |...|..:......||. .::|:..:.:..
Mouse   141 ESCIKKQISEDLGSEKFCVDANQAGSGSWLKYIR-VACSCDDQNLAMCQINE-QIYYKVIKDIEP 203

  Fly   241 GSEMVVDGR-------------PKSPV----------QLNEDFMNGGKVLAAAAAAAAAVVAASS 282
            |.|::|..:             .:.|.          |...|.....|            .|.||
Mouse   204 GEELLVHVKEGAYSLGVMAPSLDEDPTFRCDECDELFQCRLDLRRHKK------------YACSS 256

  Fly   283 SGAKSGGGGSSAPSDDRSDRDNGSLYSGDEFSKDKKNSSLIREGDIDFTDDENGFDIRCEVCDKV 347
            :||:                    ||.|  ..::.|...|....|        |....|:.|:::
Mouse   257 AGAQ--------------------LYEG--LGEELKPEGLGVGSD--------GQAHECKDCERM 291

  Fly   348 YPDLDLLDDHLIGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSN 412
            :|:...|:.|:|  .|.::.|:.|.||...|..:..||:|: :||::.:::.||||.|||.||||
Mouse   292 FPNKYSLEQHMI--VHTEEREYKCDQCPKAFNWKSNLIRHQ-MSHDSGKRFECENCVKVFTDPSN 353

  Fly   413 LQRHIRAYHVGARCHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQFSNLCRHKRMH 477
            ||||||:.|||||.|.||:|||||.||||||||:||||:||||.||||.|:||||||||||||||
Mouse   354 LQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTVKPFICEVCHKSYTQFSNLCRHKRMH 418

  Fly   478 ATCRMQIKCDKCNQSFSTLTSLTKHKKFCDSTGPGPYRNQHVNRHHQHPHQHPLPHQPHLAATAT 542
            |.||.||||..|.|.|||.:||.||::||:            .::|..|.....|..|       
Mouse   419 ADCRTQIKCKDCGQMFSTTSSLNKHRRFCE------------GKNHYTPGSIFTPGLP------- 464

  Fly   543 STCPAPPRESSESSSSAAAAAVA---AMSTPPNP-FLMFRTAPSFF----PGFPPYGFPPFL-PQ 598
             ..|:|..:.::.|.:.....:.   ...:.|:| .|.|..||..|    ||||.. |||.| |:
Mouse   465 -LTPSPMMDKTKPSPTLNHGGLGFSEYFPSRPHPGSLPFSAAPPAFPALTPGFPGI-FPPSLYPR 527

  Fly   599 NPLHPTNIPMFFSKNPMDLGCGGPEITSPVS-AFDQKLP-------FGFLKGENSESQAYDKVTE 655
            .||.|..                |.:.||:: |.|.|||       ...:...::.||.....|.
Mouse   528 PPLLPPT----------------PLLKSPLNHAQDAKLPSPLGNPALPLVSAVSNSSQGATAATG 576

  Fly   656 KELVFKAE------EKLK-KEP-LVQAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPE 712
            .|..|...      ||:| :.| :....:.|:..:.:..|:     ||...:.|:...|:..   
Mouse   577 SEEKFDGRLEDAYAEKVKNRSPDMSDGSDFEDINTTTGTDL-----DTTTGTGSDLDSDLDS--- 633

  Fly   713 RVSTPDQQQAEDDRKSID-------------IMST--------------PPPAD---TPSG--GD 745
                 |:.:.:|..|.::             .|::              |||.:   |.||  ||
Mouse   634 -----DRDKGKDKGKPVESKPEFGGASVPPGAMNSVAEVPAFYSQHSFFPPPEEQLLTASGAAGD 693

  Fly   746 GPLDLSICRKRSAGSFFTAPAEDNL------------MLHRFMPRLHEF-----------EAERG 787
            ....::...::..|..|.:..|..|            .|..|...|:.|           :||..
Mouse   694 SIKAIASIAEKYFGPGFMSMQEKKLGSLPYHSVFPFQFLPNFPHSLYPFTDRALAHNLLVKAEPK 758

  Fly   788 QPL-KMRKSHSSAES----STSQKSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSSTSEGGAVP 847
            .|. .::....|||.    :|..|..|.:...|.....|..........|.|....::..||...
Mouse   759 SPRDALKVGGPSAECPFDLTTKPKEAKPALLAPKVPLIPSSGEEQPLDLSIGSRARASQNGGGRE 823

  Fly   848 TMAAAAFAADHSALASG------PTLPQTHPTFH----------PL--------------LLEEI 882
            ......:......::.|      ..||| .|:.|          |:              :|:|.
Mouse   824 PRKNHVYGERKPGVSEGLPKVCPAQLPQ-QPSLHYAKPSPFFMDPIYSRVEKRKVADPVGVLKEK 887

  Fly   883 YRSGFPFLCQPGGRRGIEALLAGAASAAAPK-------RPLP--PVKF-----SAGSVVGLKTKD 933
            |....|.|..| ....||.:.....|.||.|       :|||  |..|     :....:..|.|:
Mouse   888 YLRPSPLLFHP-QMSAIETMTEKLESFAAMKADSGSSLQPLPHHPFNFRSPPPTLSDPILRKGKE 951

  Fly   934 RYSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSISSNLQRHVRNIHNKERPFRCELCD 998
            ||:|::|||:||||||||||||||||||||.||||||:||||||||||||||||||:||:|.||:
Mouse   952 RYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCN 1016

  Fly   999 RSFGQQTNLDRHVKKHESEG--------------NNFRDSPSSSG-----IAEREE-YFDDIRKF 1043
            |.||||||||||:||||.||              .....||:|..     :.|:|: ||.:||.|
Mouse  1017 RCFGQQTNLDRHLKKHEHEGAPVSQHSGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNF 1081

  Fly  1044 -----MNRVYT-----------------PNSLAG-----NEGDTEEYPNSDDQSV 1071
                 ||:..|                 |.|.:.     .|.:.||....||.|:
Mouse  1082 IANSEMNQASTRMDKRPEIQDLDSNPPCPGSASAKPEDVEEEEEEELEEEDDDSL 1136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 29/154 (19%)
C2H2 Zn finger 341..363 CDD:275368 6/21 (29%)
C2H2 Zn finger 371..392 CDD:275368 7/20 (35%)
SFP1 <391..479 CDD:227516 67/87 (77%)
C2H2 Zn finger 400..421 CDD:275368 17/20 (85%)
SUF4-like 403..>445 CDD:411020 33/41 (80%)
C2H2 Zn finger 403..421 CDD:411020 14/17 (82%)
C2H2 Zn finger 429..449 CDD:275368 16/19 (84%)
C2H2 Zn finger 457..477 CDD:275368 17/19 (89%)
C2H2 Zn finger 486..504 CDD:275368 10/17 (59%)
PTZ00121 <641..>728 CDD:173412 17/94 (18%)
COG5048 935..>1028 CDD:227381 73/106 (69%)
zf-C2H2 935..957 CDD:395048 17/21 (81%)
C2H2 Zn finger 937..957 CDD:275368 16/19 (84%)
zf-H2C2_2 949..973 CDD:463886 21/23 (91%)
C2H2 Zn finger 965..986 CDD:275368 19/20 (95%)
C2H2 Zn finger 994..1014 CDD:275368 15/19 (79%)
Prdm16XP_006539234.1 PR-SET_PRDM16 61..223 CDD:380990 29/148 (20%)
C2H2 Zn finger 233..253 CDD:275368 3/31 (10%)
zf-C2H2 283..305 CDD:395048 6/23 (26%)
C2H2 Zn finger 285..305 CDD:275368 6/21 (29%)
zf-H2C2_2 297..321 CDD:463886 8/25 (32%)
zf-C2H2 311..333 CDD:395048 7/22 (32%)
C2H2 Zn finger 313..333 CDD:275368 7/20 (35%)
zf-C2H2 339..360 CDD:395048 16/20 (80%)
C2H2 Zn finger 341..359 CDD:275368 15/17 (88%)
zf-C2H2 368..390 CDD:395048 17/21 (81%)
C2H2 Zn finger 370..390 CDD:275368 16/19 (84%)
zf-C2H2 396..418 CDD:395048 18/21 (86%)
C2H2 Zn finger 398..418 CDD:275368 17/19 (89%)
C2H2 Zn finger 427..445 CDD:275368 10/17 (59%)
zf-C2H2 953..975 CDD:395048 17/21 (81%)
C2H2 Zn finger 955..975 CDD:275368 16/19 (84%)
zf-H2C2_2 967..991 CDD:463886 21/23 (91%)
SUF4-like 983..>1017 CDD:411020 29/33 (88%)
C2H2 Zn finger 983..1009 CDD:411020 24/25 (96%)
C2H2 Zn finger 983..1004 CDD:275368 19/20 (95%)
zf-C2H2 1010..1032 CDD:395048 16/21 (76%)
C2H2 Zn finger 1012..1032 CDD:275368 15/19 (79%)

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