DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and Gm6710

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_001158161.1 Gene:Gm6710 / 626832 MGIID:3779623 Length:554 Species:Mus musculus


Alignment Length:869 Identity:166/869 - (19%)
Similarity:264/869 - (30%) Gaps:357/869 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 QPNDPQLAWKAHSRHYNGWLEPTEDVSTWLKKIRSVQDDCIGEANLQSYIN---AGYLW------ 231
            |.|..|..|        ..|:|::         :|:..|.:    |::|.|   .||:|      
Mouse    10 QVNFTQDEW--------ALLDPSQ---------KSLYKDVM----LETYRNLTAIGYIWEEHTIE 53

  Fly   232 --YETNRYVNAGSEMVVDGRPKSPVQLNE--DFMNGGKVLAAAAAAAAAVVAASSSGAKSGGGGS 292
              ::|:|         ..||.:......:  :|:..||..            |..||.:.     
Mouse    54 DHFQTSR---------SHGRHERSCSAEQPSEFIQCGKAF------------AYESGRQR----- 92

  Fly   293 SAPSDDRSDRDNGSLYSG-DEFSKDKKNSSLIREGDIDFTDDENGFDIRCEVCDKVYPDLDLLDD 356
                  ...:.||..:.. ::..||.:..::::......| .|..:|  |:.|.||:.....|..
Mouse    93 ------HQIKHNGEKHHDCNQCGKDFRTWNVLQIHKRTHT-GEKPYD--CKQCGKVFARSCHLQI 148

  Fly   357 HLIGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNLQRHIRAYH 421
            |  ...|..:.::.|.||......|..|..|:. :|...:.|.|..|.|.|....:||:|.|. |
Mouse   149 H--NRTHAGEKQYECNQCGKALKRRSDLQIHKR-THTGEKPYECNQCGKAFASSGDLQQHKRT-H 209

  Fly   422 VGARCHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQFSNLCRHKRMHATCRMQIKC 486
            .|.:.:.|.:|||.|...|.|:.|:..|:..||:.|:.|.||:...|:|.:|:|.| |.....:|
Mouse   210 TGEKPYECKQCGKAFSECSHLRIHKRTHTGEKPYECKQCGKAFAHSSHLHKHERTH-TGDKPYEC 273

  Fly   487 DKCNQSFSTLTSLTKHKKFCDSTGPGPYR-NQ--------HVNRHHQHPHQHPLPHQPHLAATAT 542
            ::|.::|:.:.:|..||:  ..||..||. ||        :..:.|:..|....|::.:....|.
Mouse   274 NQCGKAFAVIYTLQMHKR--THTGDKPYECNQCGKAFAVIYTLQMHKRTHTGDKPYECNQCGKAF 336

  Fly   543 STCPAPPRESSESSSSAAAAAVAAMSTPPNPFLMFRTAPSFFPGFPPYGFPPFLPQNPLHPTNIP 607
            :......|.....:                             |..||....             
Mouse   337 AVIYTLQRHKQTHT-----------------------------GEKPYKCKQ------------- 359

  Fly   608 MFFSKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSESQAYDKVTEKELVFKAEEKLKKEPLV 672
                       ||        .||.:.......|..::..:.|                      
Mouse   360 -----------CG--------KAFTRSCHLRIHKRTHTGEKPY---------------------- 383

  Fly   673 QAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSIDIMSTPPP 737
                 |.::...:....|.|                |:.:|..|                     
Mouse   384 -----ECNQCGKAFARSGDL----------------QKHKRTHT--------------------- 406

  Fly   738 ADTPSGGDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPRLHEFEAERGQPLKMRK-SHSSAES 801
                  |:.|.:...|.|..|.|..         ||:     ||......:|.:..: ..:.|||
Mouse   407 ------GEKPYECKQCGKAFAHSSH---------LHK-----HERTHTGDKPYECNQCGKAFAES 451

  Fly   802 STSQ---KSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSSTSEGGAVPTMAAAAFAADHSALAS 863
            ||.|   ::|.|..|                                                  
Mouse   452 STLQIHNRTHTGEKP-------------------------------------------------- 466

  Fly   864 GPTLPQTHPTFHPLLLEEIYRSGFPFLCQPGGRRGIEALLAGAASAAAPKRPLPPVKFSAGSVVG 928
                                                                             
Mouse   467 ----------------------------------------------------------------- 466

  Fly   929 LKTKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSISSNLQRHVRNIHNKERPFR 993
                  |.|..|||.|.....|..|.||||||:||.||.|.:||:.||:||:|.|. |:..:|:.
Mouse   467 ------YECNQCGKAFITRRVLQIHKRTHTGEKPYECKQCGKAFASSSDLQKHKRT-HSGAKPYE 524

  Fly   994 CELCDRSFGQQTNLDRHVKKHESE 1017
            |:.|.::|.|.::|..|.:.|..|
Mouse   525 CKQCGKAFAQSSHLRIHKQTHTGE 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 18/87 (21%)
C2H2 Zn finger 341..363 CDD:275368 6/21 (29%)
C2H2 Zn finger 371..392 CDD:275368 6/20 (30%)
SFP1 <391..479 CDD:227516 32/87 (37%)
C2H2 Zn finger 400..421 CDD:275368 8/20 (40%)
SUF4-like 403..>445 CDD:411020 16/41 (39%)
C2H2 Zn finger 403..421 CDD:411020 7/17 (41%)
C2H2 Zn finger 429..449 CDD:275368 8/19 (42%)
C2H2 Zn finger 457..477 CDD:275368 8/19 (42%)
C2H2 Zn finger 486..504 CDD:275368 5/17 (29%)
PTZ00121 <641..>728 CDD:173412 8/86 (9%)
COG5048 935..>1028 CDD:227381 37/83 (45%)
zf-C2H2 935..957 CDD:395048 9/21 (43%)
C2H2 Zn finger 937..957 CDD:275368 8/19 (42%)
zf-H2C2_2 949..973 CDD:404364 14/23 (61%)
C2H2 Zn finger 965..986 CDD:275368 11/20 (55%)
C2H2 Zn finger 994..1014 CDD:275368 6/19 (32%)
Gm6710NP_001158161.1 KRAB 3..44 CDD:366587 11/54 (20%)
C2H2 Zn finger 79..97 CDD:275368 5/40 (13%)
C2H2 Zn finger 105..125 CDD:275368 2/19 (11%)
COG5048 129..515 CDD:227381 125/660 (19%)
C2H2 Zn finger 133..153 CDD:275368 6/21 (29%)
C2H2 Zn finger 161..181 CDD:275368 6/20 (30%)
C2H2 Zn finger 189..209 CDD:275368 8/20 (40%)
C2H2 Zn finger 217..237 CDD:275368 8/19 (42%)
C2H2 Zn finger 245..265 CDD:275368 8/19 (42%)
C2H2 Zn finger 273..293 CDD:275368 6/21 (29%)
C2H2 Zn finger 301..321 CDD:275368 3/19 (16%)
C2H2 Zn finger 329..349 CDD:275368 2/19 (11%)
C2H2 Zn finger 357..377 CDD:275368 5/51 (10%)
C2H2 Zn finger 385..405 CDD:275368 4/35 (11%)
C2H2 Zn finger 413..433 CDD:275368 8/33 (24%)
C2H2 Zn finger 441..461 CDD:275368 6/19 (32%)
C2H2 Zn finger 469..489 CDD:275368 8/19 (42%)
C2H2 Zn finger 497..517 CDD:275368 11/20 (55%)
zf-H2C2_2 509..534 CDD:372612 9/25 (36%)
C2H2 Zn finger 525..545 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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