DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and CG4374

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_001262874.1 Gene:CG4374 / 42767 FlyBaseID:FBgn0039078 Length:772 Species:Drosophila melanogaster


Alignment Length:851 Identity:155/851 - (18%)
Similarity:249/851 - (29%) Gaps:368/851 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 HHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNLQRHIRAYH--VGA 424
            ||....:.|                |....|||              :.:|...|::..|  :.:
  Fly    64 HHQNHQQPP----------------HSHNGHNN--------------NNNNNNNHVQVVHQPITS 98

  Fly   425 RCHPCPECGKT-----------------------------FGTSSG----LKQHQHIH------- 449
            :......||.|                             .|||:|    |:.::..|       
  Fly    99 QSQQQSLCGGTRTNSNNMIHDGGGGGAGGGGGVVVPVGNRNGTSNGGDPTLQGYEFWHQDKDNSR 163

  Fly   450 ---SSVKPFACEVCSKAYTQFSNLCRHKRMHATCRMQIKCDKCNQSFSTLTSLTKHKKFCDSTGP 511
               ||:              |.:|.|:      |..|          ..:|:...:.....:..|
  Fly   164 LDSSSI--------------FEDLDRY------CWQQ----------QPVTTSASNGGSASTNQP 198

  Fly   512 GPYRNQ-HVNRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSESSSSAAAAA---VAAMSTPP- 571
            .|...| |:.:..||.....|..|..     ......|...||.::||.|.::   ::::.|.. 
  Fly   199 SPTSPQGHLQQQQQHQQHQQLQQQQQ-----QQQQQQPNANSSSAASSGAGSSSDTISSLDTTDG 258

  Fly   572 -----------NPFLMFRTAPSF------------FPGF----PPYGFPPF-------------- 595
                       .|:|....:...            |||:    .||....|              
  Fly   259 QIYTLTVLNGGEPWLKRSESEQLPTSLDLDSLLGSFPGYIKSEYPYDDSGFSTDGKDVIGNGTDG 323

  Fly   596 -----LPQN---------PLHPTNIPMFFSKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSE 646
                 .|||         |...|.|.:          .||.::...::.|         :..|::
  Fly   324 LSSISQPQNQGQQAQQTLPSLVTAISL----------AGGNDLGQQLAQF---------QNNNND 369

  Fly   647 SQAYDKVTEKELVFKAEEKLKKEPLVQAFEG-------------------EEDESR--------- 683
            ....|..||      .|:...:..|..|.:|                   :||..|         
  Fly   370 WHMADHNTE------TEQSTAESLLRSALQGKGYAKGLHMQNGLTMPVVKDEDMRRLLFADEAAA 428

  Fly   684 -----SSLDIKGKLEDTRNDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSIDIMSTPPPADTPSG 743
                 |:|......::.:....|.:|...:|:       .||||.:...:|.:            
  Fly   429 LGFADSTLSAAQMFDEAQGIHLSSQQQQQQQQ-------QQQQAHNGNANILV------------ 474

  Fly   744 GDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPRLHEFEAERGQPLKMRKSHSSAESSTSQKSH 808
                                    |::.|........:||       |:::..:..:...|    
  Fly   475 ------------------------DDMFLSLENAFSDDFE-------KIKRIANEVQQFCS---- 504

  Fly   809 KGSSPTPT-----PTASPGLTPSPSPPTSAGGELS---------STSEGGAVPTMAAAAFAA-DH 858
            .|||.|||     |::...:..||||..::.|:|.         |||..   ||.|..|.|| :|
  Fly   505 AGSSGTPTPGDYVPSSDVLMQISPSPAVTSAGQLQPPQPLKPEVSTSTS---PTSAVVASAASNH 566

  Fly   859 SALASGPTLPQTHPTFHPLLLEEIYR-----SGFPFLCQPGGRRGIEALLAGAAS-------AAA 911
            .....|...|           ::.|:     :..|.:.......|...|:||:.|       :|:
  Fly   567 VRSGGGVVKP-----------KKAYKRSSSNNNNPNVANNNQSSGGNPLIAGSGSGSSSSSGSAS 620

  Fly   912 PKRPLPPVK---FSAGSVVGLKTKDR--YSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRA 971
            .....||..   .|:.|....:.|:|  :.|..|.|.|....::..|:|||||            
  Fly   621 SSSNSPPANSGGSSSSSSGSTQRKERSLHYCSICAKGFKDKYSVNVHIRTHTG------------ 673

  Fly   972 FSISSNLQRHVRNIHNKERPFRCELCDRSFGQQTNLDRHVKKHESEGNN-----------FRDSP 1025
                             |:||.|.||.:||.|:.:|.:|.:.|.::.||           .|.|.
  Fly   674 -----------------EKPFACSLCGKSFRQKAHLAKHYQTHMTQKNNGNIIKGGSGKHQRSSG 721

  Fly  1026 SSSGIA 1031
            ||:|.|
  Fly   722 SSAGSA 727

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978