DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and CG1602

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_610291.2 Gene:CG1602 / 35684 FlyBaseID:FBgn0033186 Length:577 Species:Drosophila melanogaster


Alignment Length:201 Identity:60/201 - (29%)
Similarity:90/201 - (44%) Gaps:26/201 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 CEVCDKVYPDLDLLDDHLIGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRK-YSCENCS 404
            ||.|.::.....:|..|:..||:..:..|.|..|...|..|..|..|  |...:|.| :.|.:|.
  Fly   367 CEFCHQITSSDHVLQSHIFKAHNIGELPFKCTLCDRSFVGRCELANH--IQRVHIGKTHKCTHCE 429

  Fly   405 KVFCDPSNLQRHIRAYHVGARCHPCPECGKTFGTSSGLKQH-QHIHSSVKPFACEVCSKAYTQFS 468
            :.|...|:||.|||. |.|.:.:.|..|||.|...|.:..| ..||:.::.|.|.:|.|.:.:..
  Fly   430 RSFAVMSDLQLHIRT-HTGHKPYVCEHCGKAFRLRSQMTLHVTAIHTKIRAFKCTMCPKDFVKKV 493

  Fly   469 NLCRHKRMHATCRMQIKCDKCNQSFSTLTSLTKHK-----------KFCDS-----TGPGPYRNQ 517
            :|..|.:.|...|.:| |..|.:.|::..:|.:|:           |.|||     .|    .|.
  Fly   494 DLSDHIKGHLNIRDKI-CSVCGKGFTSCHALIRHRQIHSEVKKFVCKLCDSRFSQFVG----LNT 553

  Fly   518 HVNRHH 523
            |:.|.|
  Fly   554 HMKRTH 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368 6/21 (29%)
C2H2 Zn finger 371..392 CDD:275368 7/20 (35%)
SFP1 <391..479 CDD:227516 29/89 (33%)
C2H2 Zn finger 400..421 CDD:275368 9/20 (45%)
SUF4-like 403..>445 CDD:411020 16/41 (39%)
C2H2 Zn finger 403..421 CDD:411020 8/17 (47%)
C2H2 Zn finger 429..449 CDD:275368 7/20 (35%)
C2H2 Zn finger 457..477 CDD:275368 5/19 (26%)
C2H2 Zn finger 486..504 CDD:275368 5/28 (18%)
PTZ00121 <641..>728 CDD:173412
COG5048 935..>1028 CDD:227381
zf-C2H2 935..957 CDD:395048
C2H2 Zn finger 937..957 CDD:275368
zf-H2C2_2 949..973 CDD:404364
C2H2 Zn finger 965..986 CDD:275368
C2H2 Zn finger 994..1014 CDD:275368
CG1602NP_610291.2 GT1 157..244 CDD:304916
MADF_DNA_bdg 273..356 CDD:287510
C2H2 Zn finger 367..388 CDD:275368 5/20 (25%)
C2H2 Zn finger 397..418 CDD:275368 7/22 (32%)
COG5048 <423..554 CDD:227381 40/136 (29%)
C2H2 Zn finger 425..445 CDD:275368 9/20 (45%)
zf-H2C2_2 437..460 CDD:290200 11/23 (48%)
C2H2 Zn finger 453..470 CDD:275368 6/16 (38%)
C2H2 Zn finger 482..502 CDD:275368 5/19 (26%)
C2H2 Zn finger 510..530 CDD:275368 5/19 (26%)
C2H2 Zn finger 538..559 CDD:275368 8/24 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24393
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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