DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and CG10348

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster


Alignment Length:433 Identity:144/433 - (33%)
Similarity:193/433 - (44%) Gaps:119/433 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   742 SGGDGPLDLSICRKRSAGSFFTAPAED---NLMLHRFMPRLHEFEAERGQPLKMRKSHSSAESS- 802
            |..|.||||.:..||........|.||   ||::.     ..|....:.:..::..:|.:|..: 
  Fly    88 SSFDQPLDLRLAHKRKTDLVDQGPMEDENSNLIMF-----ASELAVAQQKEKELNNNHIAASLAD 147

  Fly   803 ----TSQKSHK-------------------GSSPTPTPTASPGLTPSPSPPTSAGGELSSTSEGG 844
                .|:|..:                   |..|   |.|.|...|..|.|......|.:.::. 
  Fly   148 LGFDMSRKMLRALREGGAGGGGGGGGGGGGGGGP---PNAPPLTPPQCSIPAVHPTLLEAMTKN- 208

  Fly   845 AVPTMAAAAFA------ADHSALASGPT---------------------------LPQTHPTFHP 876
             :|......||      .:..|.:|.||                           ||..:|...|
  Fly   209 -LPLQYRNVFAGVLPGKVNSPAASSSPTGADFPFRHPLKKCELTWPPPTEQLQLELPHPNPKLSP 272

  Fly   877 LLLEEIYRSGFPFLCQPGGRRGIEALLAGAASAAAPKRPLPPVKFSAGSVVGLKTKDRYSCKFCG 941
            :|       ..|.|.....||..:|..|.....|.|..|             .:.||||:|||||
  Fly   273 VL-------PHPQLQDYQTRRKNKARTAATGGNATPNLP-------------QRNKDRYTCKFCG 317

  Fly   942 KVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSISSNLQRHVRNIHNKERPFRCELCDRSFGQQTN 1006
            ||||||||||||||||||||||.||||:|:|||||||||||||||||||||:||:|:|.||||||
  Fly   318 KVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTN 382

  Fly  1007 LDRHVKKHESEGNNFRDSPSSSGIAER-------------EEYFDDIRKFMNRVYTPNSLAGNEG 1058
            ||||:|||||:..:.   .:.||::||             |.||::||.||.:|           
  Fly   383 LDRHLKKHESDAVSL---SALSGVSERMHCIRRFCENPTEESYFEEIRSFMGKV----------- 433

  Fly  1059 DTEEYPNSDDQSVNLEKDSGNFNNNSSNISNNNSSSGNNNNSS 1101
             |::......|..: ::......:.:::.|::.|||.:...||
  Fly   434 -TQQQQQQQQQQQH-DQQQQQHQSTATSASSSCSSSRDTPTSS 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368
C2H2 Zn finger 371..392 CDD:275368
SFP1 <391..479 CDD:227516
C2H2 Zn finger 400..421 CDD:275368
SUF4-like 403..>445 CDD:411020
C2H2 Zn finger 403..421 CDD:411020
C2H2 Zn finger 429..449 CDD:275368
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 486..504 CDD:275368
PTZ00121 <641..>728 CDD:173412
COG5048 935..>1028 CDD:227381 73/92 (79%)
zf-C2H2 935..957 CDD:395048 20/21 (95%)
C2H2 Zn finger 937..957 CDD:275368 19/19 (100%)
zf-H2C2_2 949..973 CDD:404364 20/23 (87%)
C2H2 Zn finger 965..986 CDD:275368 18/20 (90%)
C2H2 Zn finger 994..1014 CDD:275368 15/19 (79%)
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 52/75 (69%)
zf-C2H2 311..333 CDD:278523 20/21 (95%)
C2H2 Zn finger 313..333 CDD:275368 19/19 (100%)
zf-H2C2_2 325..349 CDD:290200 20/23 (87%)
C2H2 Zn finger 341..362 CDD:275368 18/20 (90%)
zf-H2C2_2 353..377 CDD:290200 20/23 (87%)
zf-C2H2 368..390 CDD:278523 16/21 (76%)
C2H2 Zn finger 370..390 CDD:275368 15/19 (79%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468443
Domainoid 1 1.000 53 1.000 Domainoid score I11374
eggNOG 1 0.900 - - E33208_3BAJ6
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5270
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D112763at50557
OrthoFinder 1 1.000 - - FOG0002720
OrthoInspector 1 1.000 - - otm14790
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24393
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.800

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