DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and Klf11

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_001032431.2 Gene:Klf11 / 313994 RGDID:1306646 Length:501 Species:Rattus norvegicus


Alignment Length:594 Identity:135/594 - (22%)
Similarity:190/594 - (31%) Gaps:221/594 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   508 STGPGPYRNQHV----------NRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSE-------S 555
            |||||..|...:          .||........:..|..:.|.....|.:...:.|:       |
  Rat     6 STGPGDARAADIMDICESILERKRHDSERSTCSILEQTDIEAVEALVCMSSWGQRSQVRPLTPVS 70

  Fly   556 SSSAAAAAVAAMSTPPNPFLMFRTAPSFFPGFPPYGFPPFLPQNP--LHPTNIPMFFSKNPMDL- 617
            .|.....||...:..|:       .|..|..|......|  ||:|  :.||..|:     |..: 
  Rat    71 DSGDVTTAVLMDTAAPD-------LPKDFHSFSTLCITP--PQSPELMEPTGTPV-----PSQVI 121

  Fly   618 ---GC----------GGPEITSPVSAFDQKLPFGFLKGE----NSESQAYDKVTEKELVFKAEEK 665
               ||          |||...|              |||    :|||.....:|.          
  Rat   122 NSQGCMATALPPSPTGGPRTLS--------------KGEPPEPSSESSCRAVMTS---------- 162

  Fly   666 LKKEPLVQAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPERVST-PDQQQAEDDRKSI 729
                  |....||                             ...|....| |.|:|        
  Rat   163 ------VIRHTGE-----------------------------SPAPTCFPTGPTQEQ-------- 184

  Fly   730 DIMSTPPPADTPSGGDGPL--------DLSICRKRSAGSFFTAPAEDNLMLHRFM---PRLHE-- 781
                   ||....||..||        |..:.              |.|::...:   |.||:  
  Rat   185 -------PASDSRGGQDPLLDHLEALQDTRLA--------------DGLLVTNLVSCQPCLHKSG 228

  Fly   782 --FEAERGQ----PLKMRKS-HSSAESSTSQKSHKGSSPTP---TPTASPGLTPSPSPPTSAGGE 836
              |..::||    |..::.. ..:.||..|:|:      ||   .|.:||.:.....|.....|.
  Rat   229 GLFPIDKGQQTVWPTAVQTCLPKNPESDLSRKT------TPFISVPVSSPPVLCQMIPVAGQNGM 287

  Fly   837 LSSTSEGGAVPTMAAAAFAADHSALASG---PTLPQTHPTFHPLLLEE----------IYRSGFP 888
            ||              ||....:.|.:|   |.|||......|:.:..          :.:|.||
  Rat   288 LS--------------AFLRPPTQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQSTFP 338

  Fly   889 FLCQPG---------GRRGIEALLAGAASAAAPKRPLPPVKFSAGSVVGLKTKDRYSCKF--CGK 942
               ||.         |...:..|.......|:.:...|.|.||        .:..|.|.|  |.|
  Rat   339 ---QPAACPSSVMAIGNTKLLPLAPAPVFVASSQNCAPQVDFS--------RRRNYVCNFPGCRK 392

  Fly   943 VFPRSANLTRHLRTHTGEQPYPCKY--CDRAFSISSNLQRHVRNIHNKERPFRCELCDRSFGQQT 1005
            .:.:|::|..||||||||:|:.|.:  ||:.|:.|..|.|| |..|..|:.|.|.:|||.|.:..
  Rat   393 TYFKSSHLKAHLRTHTGEKPFTCSWDGCDKKFARSDELSRH-RRTHTGEKKFVCPVCDRRFMRSD 456

  Fly  1006 NLDRHVKKH 1014
            :|.:|.::|
  Rat   457 HLTKHARRH 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368
C2H2 Zn finger 371..392 CDD:275368
SFP1 <391..479 CDD:227516
C2H2 Zn finger 400..421 CDD:275368
SUF4-like 403..>445 CDD:411020
C2H2 Zn finger 403..421 CDD:411020
C2H2 Zn finger 429..449 CDD:275368
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 486..504 CDD:275368
PTZ00121 <641..>728 CDD:173412 15/91 (16%)
COG5048 935..>1028 CDD:227381 36/84 (43%)
zf-C2H2 935..957 CDD:395048 10/23 (43%)
C2H2 Zn finger 937..957 CDD:275368 9/21 (43%)
zf-H2C2_2 949..973 CDD:404364 13/25 (52%)
C2H2 Zn finger 965..986 CDD:275368 9/22 (41%)
C2H2 Zn finger 994..1014 CDD:275368 7/19 (37%)
Klf11NP_001032431.2 KLF11_N 40..383 CDD:409242 91/475 (19%)
COG5048 381..>438 CDD:227381 25/57 (44%)
C2H2 Zn finger 388..407 CDD:275368 7/18 (39%)
C2H2 Zn finger 415..437 CDD:275368 9/22 (41%)
zf-C2H2 443..465 CDD:395048 8/21 (38%)
C2H2 Zn finger 445..465 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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