DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ham and Klf17

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:XP_038967113.1 Gene:Klf17 / 298449 RGDID:1307711 Length:383 Species:Rattus norvegicus


Alignment Length:388 Identity:93/388 - (23%)
Similarity:137/388 - (35%) Gaps:128/388 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   703 EQDDMKQEPERVSTPDQQQAEDDRKSIDIMSTPPPADTPSGGDGPLDLSICRKRSAGSFFTAPAE 767
            |||:.:|.        ..|:..|.:.:..:|..|.:   ||..|              |...||.
  Rat     2 EQDNEQQA--------MHQSPMDNEMLMPVSHMPGS---SGNSG--------------FHQPPAP 41

  Fly   768 DNL--MLHRFMPRLHEFEAERG--QPLKMRKSHSSAESSTSQKSHKGSSPTPT------------ 816
            ..|  ::..:|....||....|  :|..:|....|.....||     ..|||:            
  Rat    42 QYLPELMRPYMASAEEFRCSEGGWEPQFIRSLPESGARCPSQ-----LIPTPSQNYCQRSIGRGS 101

  Fly   817 ---PTASPGL-------------TPSPSPPTSAGGELSSTSEGGAVPTMAAAAFAADHSALASG- 864
               |..:||.             ....|.|.|.|..:.:.|....:|...:....|...:|..| 
  Rat   102 HVMPVGNPGTLGVAISFSENLMSQGGLSSPASCGVSVMTHSNAPTMPYSVSPTVPATTGSLKPGI 166

  Fly   865 ---PTLP--QTH---PTFHPLLLE---EIYRSGF---------------------PFLC-QPGGR 896
               |.:|  :||   |..:.:|..   |:..:.|                     ||:| ||   
  Rat   167 FLVPGMPSAETHAVTPYMNQMLHSVNPEMVSARFQQLLPIDSQDSLATQSNVQEGPFMCEQP--- 228

  Fly   897 RGIEALLAGAASAAAPKRPLPPVKFSAGSVVGLKTKDR------YSCKF--CGKVFPRSANLTRH 953
                             .|.|..:.:|.:..| .|:.|      |.|.:  |||.:.:.::|..|
  Rat   229 -----------------TPAPQERETASTSRG-ATRRRSLVLRPYVCSYDDCGKAYTKRSHLVSH 275

  Fly   954 LRTHTGEQPYPC--KYCDRAFSISSNLQRHVRNIHNKERPFRCELCDRSFGQQTNLDRHVKKH 1014
            ||.||||:||.|  |.|...|..|..|.||.| ||.:.||.:|:.|:|.|.:..:|.:|.:.|
  Rat   276 LRKHTGEKPYICDWKGCKWRFFRSDELGRHKR-IHTRYRPHKCDECNREFMRSDHLRQHKRTH 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978
C2H2 Zn finger 341..363 CDD:275368
C2H2 Zn finger 371..392 CDD:275368
SFP1 <391..479 CDD:227516
C2H2 Zn finger 400..421 CDD:275368
SUF4-like 403..>445 CDD:411020
C2H2 Zn finger 403..421 CDD:411020
C2H2 Zn finger 429..449 CDD:275368
C2H2 Zn finger 457..477 CDD:275368
C2H2 Zn finger 486..504 CDD:275368
PTZ00121 <641..>728 CDD:173412 6/24 (25%)
COG5048 935..>1028 CDD:227381 35/84 (42%)
zf-C2H2 935..957 CDD:395048 9/23 (39%)
C2H2 Zn finger 937..957 CDD:275368 8/21 (38%)
zf-H2C2_2 949..973 CDD:404364 13/25 (52%)
C2H2 Zn finger 965..986 CDD:275368 9/22 (41%)
C2H2 Zn finger 994..1014 CDD:275368 6/19 (32%)
Klf17XP_038967113.1 KLF17_N 1..259 CDD:410567 60/307 (20%)
zf-C2H2 255..279 CDD:395048 9/23 (39%)
C2H2 Zn finger 260..279 CDD:275368 7/18 (39%)
C2H2 Zn finger 287..309 CDD:275368 9/22 (41%)
zf-H2C2_2 304..324 CDD:404364 10/20 (50%)
zf-C2H2 315..337 CDD:395048 6/21 (29%)
C2H2 Zn finger 317..337 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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