DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and Zfp28

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_780456.2 Gene:Zfp28 / 22690 MGIID:99175 Length:825 Species:Mus musculus


Alignment Length:1116 Identity:214/1116 - (19%)
Similarity:325/1116 - (29%) Gaps:460/1116 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 PVEGSPPRRDHLDIQDQE-----------LLHHPNHFHQQNQRQQPPPPTLPLSVESSSAAAASV 116
            |..|.|..|:.|..|||:           |.....:|.|:..|:|...||.......|.......
Mouse    42 PDRGRPRSRNSLASQDQQGAVTSGTAHKALFSRDTNFLQEINRKQEAAPTGTRHKAKSQGLVTFG 106

  Fly   117 DGMDAFFKDRAQAEHILQEWVRRRE-----PVCELDIRD--SGGVYAKTP--------------L 160
            |....|.::.       .||:...:     .|...:.|:  |.|:.|..|              :
Mouse   107 DVAVVFSQEE-------WEWLNSEQRSLYWKVMLDNYRNLASLGLCASQPDMITSLEQGRDPWMM 164

  Fly   161 QRGTRYG------------PFPMK----------------LSHQPNDPQL--AWK---AHSRH-- 190
            :|..|.|            .||.|                |.|:|....:  ||:   ..:.|  
Mouse   165 KRKMRKGQHLDLKAMQETKEFPPKDLSEETLFLAVLRKQLLPHRPKCSMVRAAWEGGAVFTTHRG 229

  Fly   191 --YNGWL---EPTEDVSTWLKKIRSVQ-DDC-----IGEANLQSYIN------------AGYLW- 231
              .|..|   .|.:.||......:||. ::|     :|:.::|...:            .|..| 
Mouse   230 LKTNSGLARDSPAQLVSAQRSFCKSVTWENCGDRGSVGQQSVQEAQDLLPRQDSHAERVTGRTWS 294

  Fly   232 --YETNRYVNAGSEMVVDGRPKSPVQLNEDFMNGGKVLAAAAAAAAAVVAASSSGAKSGGGGSSA 294
              .|.:.:.:..||...:...:..|..|..|..|...:.                .:||......
Mouse   295 TKLECSTFRDQDSECTFERNEQETVTPNRAFSEGRDGMC----------------IESGRWFHLN 343

  Fly   295 PSDDRSDRDNGSLYSGDEFSKDKKNSSLIREGDIDFTDDENGFDI-RCEVCDKVYPDLDLLDDHL 358
            .||:||...:    ||..||   .|..:::|..|.     :|..: :|..|.|.:.....|..| 
Mouse   344 SSDERSHNCD----SGKSFS---SNPVVVKETGIC-----SGKKLFQCNECKKTFTQSSSLTVH- 395

  Fly   359 IGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNLQRHIRAYHVG 423
             ...|..:..:.|.||...|.......:|:. .|...:.|.|..|.|.|...::|.||.|.||.|
Mouse   396 -QRIHTGEKPYKCNQCGKAFSDGSSFARHQR-CHTGKKPYECPECGKAFIQNTSLVRHWRYYHTG 458

  Fly   424 ARCHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQFSNLCRHKRMHATCRMQIKCDK 488
            .:...|.:|||.|....||.||:.||:..||:.||||.|::...|:|..|:|:| |.....:|:.
Mouse   459 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYTCEVCHKSFRYGSSLTVHQRIH-TGEKPYECEI 522

  Fly   489 CNQSFSTLTSLTKHKKF--------CDSTGPGPYRNQHVNRHHQHPHQHPLPHQPHLAATATSTC 545
            |.::||...|||:|::.        |...|....:|.|:..|.:                     
Mouse   523 CRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIHLASHWR--------------------- 566

  Fly   546 PAPPRESSESSSSAAAAAVAAMSTPPNPFLMFRTAPSFFPGFPPYGFPPFLPQNPLHPTNIPMFF 610
                                 :.|...||                                    
Mouse   567 ---------------------IHTGEKPF------------------------------------ 574

  Fly   611 SKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSESQAYDKVTEKELVFKAEEKLKKEPLVQAF 675
                   .||                                                       
Mouse   575 -------ECG------------------------------------------------------- 577

  Fly   676 EGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSIDIMSTPPPADT 740
                 |...|..|..:|                ...:|:.|                        
Mouse   578 -----ECGKSFSISSQL----------------ATHQRIHT------------------------ 597

  Fly   741 PSGGDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPRLHEFEAERGQPLKMRKSHSSAESSTSQ 805
               |:.|.:..:|||.     ||                             :|:|.:..    |
Mouse   598 ---GEKPYECKVCRKA-----FT-----------------------------QKAHLAQH----Q 621

  Fly   806 KSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSSTSEGGAVPTMAAAAFAADHSALASGPTLPQT 870
            |:|.|..|                                            :.....|....| 
Mouse   622 KTHTGEKP--------------------------------------------YECKECGKAFSQ- 641

  Fly   871 HPTFHPLLLEEIYRSGFPFLCQPGGRRGIEALLAGAASAAAPKRPLPPVKFSAGSVVGLKTKDR- 934
              |.|.:..:.::....|:.|...|:      ..|..|:....|             .|.|..| 
Mouse   642 --TTHLIQHQRVHTGEKPYKCLECGK------AFGDNSSCTQHR-------------RLHTGQRP 685

  Fly   935 YSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSISSNLQRHVRNIHNKERPFRCELCDR 999
            |.|..|||.|...::|..|.|.||||:||.|..|.:|||...:|..|.| ||:.::|:.|:.|.:
Mouse   686 YECVECGKTFKTKSSLICHRRCHTGEKPYECSACGKAFSHRQSLSVHQR-IHSGKKPYECKECRK 749

  Fly  1000 SFGQQTNLDRHVKKHESEGN-NFR---------------------DSPSSSGIAEREEYFDDIRK 1042
            :|.|..:|::|.:.|..|.. |::                     .||:...:.......|...|
Mouse   750 TFIQIGHLNQHKRVHTGERTYNYKKGRRAFRQTAHFAHHQQIHSGKSPAHHSLPSTSNPVDLFSK 814

  Fly  1043 FMNRVYTPNSL 1053
            |   |:.|:||
Mouse   815 F---VWNPSSL 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 35/203 (17%)
C2H2 Zn finger 341..363 CDD:275368 5/21 (24%)
C2H2 Zn finger 371..392 CDD:275368 5/20 (25%)
SFP1 <391..479 CDD:227516 36/87 (41%)
C2H2 Zn finger 400..421 CDD:275368 8/20 (40%)
SUF4-like 403..>445 CDD:411020 17/41 (41%)
C2H2 Zn finger 403..421 CDD:411020 7/17 (41%)
C2H2 Zn finger 429..449 CDD:275368 9/19 (47%)
C2H2 Zn finger 457..477 CDD:275368 9/19 (47%)
C2H2 Zn finger 486..504 CDD:275368 8/17 (47%)
PTZ00121 <641..>728 CDD:173412 6/86 (7%)
COG5048 935..>1028 CDD:227381 37/114 (32%)
zf-C2H2 935..957 CDD:395048 9/21 (43%)
C2H2 Zn finger 937..957 CDD:275368 8/19 (42%)
zf-H2C2_2 949..973 CDD:404364 12/23 (52%)
C2H2 Zn finger 965..986 CDD:275368 8/20 (40%)
C2H2 Zn finger 994..1014 CDD:275368 6/19 (32%)
Zfp28NP_780456.2 C2H2 Zn finger 716..736 CDD:275368 8/20 (40%)
zf-H2C2_2 728..753 CDD:290200 9/25 (36%)
C2H2 Zn finger 744..764 CDD:275368 6/19 (32%)
C2H2 Zn finger 772..792 CDD:275368 0/19 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..65 8/22 (36%)
KRAB 103..163 CDD:214630 10/66 (15%)
KRAB 103..142 CDD:279668 6/45 (13%)
KRAB <243..281 CDD:214630 7/37 (19%)
COG5048 341..763 CDD:227381 143/730 (20%)
C2H2 Zn finger 355..371 CDD:275368 5/18 (28%)
zf-C2H2 377..399 CDD:278523 5/23 (22%)
C2H2 Zn finger 379..399 CDD:275368 5/21 (24%)
zf-H2C2_2 391..415 CDD:290200 6/25 (24%)
C2H2 Zn finger 407..427 CDD:275368 5/20 (25%)
zf-H2C2_2 419..444 CDD:290200 7/25 (28%)
C2H2 Zn finger 435..453 CDD:275368 7/17 (41%)
C2H2 Zn finger 464..484 CDD:275368 9/19 (47%)
zf-H2C2_2 477..501 CDD:290200 12/23 (52%)
C2H2 Zn finger 492..512 CDD:275368 9/19 (47%)
zf-H2C2_2 504..529 CDD:290200 8/25 (32%)
C2H2 Zn finger 520..540 CDD:275368 8/19 (42%)
zf-H2C2_2 532..557 CDD:290200 6/24 (25%)
C2H2 Zn finger 548..568 CDD:275368 5/61 (8%)
zf-H2C2_2 560..584 CDD:290200 9/168 (5%)
C2H2 Zn finger 576..596 CDD:275368 7/95 (7%)
zf-H2C2_2 589..613 CDD:290200 10/100 (10%)
C2H2 Zn finger 604..624 CDD:275368 9/57 (16%)
zf-H2C2_2 616..641 CDD:290200 7/72 (10%)
C2H2 Zn finger 632..652 CDD:275368 4/22 (18%)
zf-H2C2_2 644..667 CDD:290200 4/28 (14%)
C2H2 Zn finger 660..680 CDD:275368 5/38 (13%)
C2H2 Zn finger 688..708 CDD:275368 8/19 (42%)
zf-H2C2_2 700..725 CDD:290200 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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