DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and egl-43

DIOPT Version :10

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:NP_001022288.1 Gene:egl-43 / 174552 WormBaseID:WBGene00001207 Length:543 Species:Caenorhabditis elegans


Alignment Length:803 Identity:192/803 - (23%)
Similarity:272/803 - (33%) Gaps:364/803 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 MVVDGRPKSPVQLNEDFMNGGKVLAAAAAAAAAVVAASSSGAKSGGGGSSAPSDDRS-------- 300
            |.:|....:.|::.||.::|..::|....|.         |...|....:.|:|..:        
 Worm     1 MSIDTDFLTSVEVKEDELHGNVLIAVTQIAL---------GRTIGVIDKATPNDSNALLILNLIK 56

  Fly   301 DRDNGSLYSGDEFSKDKK----NSSLIREGD---IDFTDDENGFDIRCEVCDKVYPDLDLLDDHL 358
            :.|:|...:.....:|:|    .|.:|..|:   :....:|.        ||:...| ||  ::|
 Worm    57 EADDGEDANICMRQEDRKTFLQTSKIINIGERLLLQRLSEEE--------CDEEDQD-DL--ENL 110

  Fly   359 IGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNL---QRHIRAY 420
            |                        |:|.|.      |..|.::|:|...:.|||   :.:||.:
 Worm   111 I------------------------LLKDED------RPDSTQSCTKSSSEDSNLNGFEEYIREH 145

  Fly   421 HV---------GARCHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQFSNLCRHKRM 476
            ..         |:  |.|..|.|:|.::||||||.|||.|:|||.|.:|.|:||||||||||:|:
 Worm   146 GELVPGQTPPDGS--HKCGVCPKSFSSASGLKQHSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRV 208

  Fly   477 HATCRMQIKCDKCNQSFSTLTSLTKHKKFCDST-------------------GPGPYRNQHVNRH 522
            |:.   ...|..|.....:..:||||:..|:.|                   |..||....:...
 Worm   209 HSD---GWTCPTCQSQMPSQAALTKHRPVCEMTALYKPLMAQLAGLSGAGGLGSVPYWPHILQMA 270

  Fly   523 HQHPHQHPLPHQPHLAAT-------ATSTCPAPPRESSESSSSAAAAAVAAMSTPPNPFLMFRTA 580
            .|.|| .||   ..|||.       ..:||.:|..|.|...:|.::                   
 Worm   271 TQAPH-FPL---AFLAANPEAYKLMQQTTCASPDAECSSGHASESS------------------- 312

  Fly   581 PSFFPGFPPYGFPPFLPQNPLHPTNIPMFFSKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENS 645
                                                     |..|.||.......|         
 Worm   313 -----------------------------------------PTTTEPVDLTATPKP--------- 327

  Fly   646 ESQAYDKVTEKELVFKAEEKLKKEPLVQAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQE 710
                 ...:|.|...|::            :||:             .|:..||.:::.||.:. 
 Worm   328 -----PSTSEMETTSKSD------------DGED-------------RDSIGDSGNDDDDDSEA- 361

  Fly   711 PERVSTPDQQQAEDDRKSIDIMSTPPPADTPSGGDGPLDLSICRKRSAGSFFTAPAEDNLMLHRF 775
                                               |.||                          
 Worm   362 -----------------------------------GVLD-------------------------- 365

  Fly   776 MPRLHEFEAERGQPLKMRKSHSSAESSTSQKSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSST 840
                                    ||||:                   |.:...|||     .:.
 Worm   366 ------------------------ESSTT-------------------TSTKKRPTS-----HTI 382

  Fly   841 SEGGAVPTMAAAAFAAD-----HSALASGPTLPQTHPTFHPLLLEEIYRSGFPFLCQPGGRRGIE 900
            |:..|.|.:.|.|..:.     ..:|...|.:|..|                .||          
 Worm   383 SDILAAPQLGAQALNSTFLGMLQRSLNYNPAVPSPH----------------SFL---------- 421

  Fly   901 ALLAGAASAAAPKRPLPPVKFSAGSVVGLKTKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYPC 965
            ..::||.::::|..       |:||     .||||:||||.||||||||||||||||||||||.|
 Worm   422 RAMSGAKASSSPSS-------SSGS-----GKDRYTCKFCQKVFPRSANLTRHLRTHTGEQPYKC 474

  Fly   966 KYCDRAFSISSNLQRHVRNIHNK 988
            :||:|:|||||||||||||||||
 Worm   475 QYCERSFSISSNLQRHVRNIHNK 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 2/8 (25%)
C2H2 Zn finger 341..363 CDD:275368 7/21 (33%)
C2H2 Zn finger 371..392 CDD:275368 3/20 (15%)
SFP1 <391..479 CDD:227516 43/99 (43%)
C2H2 Zn finger 400..421 CDD:275368 7/23 (30%)
SUF4-like 403..>445 CDD:411020 17/53 (32%)
C2H2 Zn finger 403..421 CDD:411020 7/20 (35%)
C2H2 Zn finger 429..449 CDD:275368 11/19 (58%)
C2H2 Zn finger 457..477 CDD:275368 14/19 (74%)
C2H2 Zn finger 486..504 CDD:275368 6/17 (35%)
PTZ00121 <641..>728 CDD:173412 10/86 (12%)
COG5048 935..>1028 CDD:227381 48/54 (89%)
zf-C2H2 935..957 CDD:395048 19/21 (90%)
C2H2 Zn finger 937..957 CDD:275368 18/19 (95%)
zf-H2C2_2 949..973 CDD:463886 19/23 (83%)
C2H2 Zn finger 965..986 CDD:275368 17/20 (85%)
C2H2 Zn finger 994..1014 CDD:275368
egl-43NP_001022288.1 SFP1 <115..210 CDD:227516 43/102 (42%)
C2H2 Zn finger 161..181 CDD:275368 11/19 (58%)
C2H2 Zn finger 189..209 CDD:275368 14/19 (74%)
C2H2 Zn finger 215..232 CDD:275368 5/16 (31%)
zf-C2H2 444..466 CDD:395048 19/21 (90%)
C2H2 Zn finger 446..466 CDD:275368 18/19 (95%)
zf-H2C2_2 458..482 CDD:463886 19/23 (83%)
C2H2 Zn finger 474..495 CDD:275368 17/20 (85%)
Blue background indicates that the domain is not in the aligned region.

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