DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and znf850

DIOPT Version :9

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:XP_004918470.2 Gene:znf850 / 100491483 XenbaseID:XB-GENE-6039282 Length:651 Species:Xenopus tropicalis


Alignment Length:822 Identity:178/822 - (21%)
Similarity:284/822 - (34%) Gaps:256/822 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 VVDGRPKSPVQLNEDFMNGGKVLAAAAAAAAAVVAASSSGA----KSGGGGSSAPSD------DR 299
            :.:||.    ..|.||.|   |......:.....::||.|.    |...|.:.|..|      ::
 Frog    10 ICEGRH----HFNADFAN---VKHGKNDSREGEKSSSSHGTGPRKKDVSGITEATEDAEAERAEK 67

  Fly   300 SDRDNGSLYSGDEFS-----KDKKNSSLIREGDIDFTDDENGFDIRCEVCDKVYPDLDLLDDHLI 359
            |:::|  :...||.|     ....:||:.::.|             |.||.|::.....|..|  
 Frog    68 SEKEN--IPEQDESSVPGEASPPADSSVDKQHD-------------CPVCHKLFKSHSELIKH-- 115

  Fly   360 GAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSKVFCDPSNLQRHIRAYHVGA 424
            ...|.|: |:.|.:|..:|..:..|:||........:..||.:|:|.|...|..:.|::.:.   
 Frog   116 QKIHAKK-EWICLECHKQFPTKAKLVKHRKTHRGKGKTLSCPHCTKRFMRKSKFEAHLKVHE--- 176

  Fly   425 RCHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCSKAYTQFSNLCRHKRMHATCRMQIKCDKC 489
            :.:.||||.:.|...|...:|..:|:..|.|.|..|.|.::|.::..:|||.|.. ...:.|.:|
 Frog   177 KTYVCPECDRCFNIKSNFTRHMLVHTEEKRFVCSECGKGFSQNTHYLKHKRSHKN-EYLVYCSEC 240

  Fly   490 NQSFSTLTSLTKHKKF--------CDSTGPGPYRNQHVNRHHQ-HPHQHPLPHQPHLAATATSTC 545
            .:.|....||..|.|.        |...|.|..:|.|:..|.: |..:.|.            .|
 Frog   241 GKGFFDKYSLKAHLKIHTGEKPFSCSECGKGFIQNSHLVLHLRIHTGEKPF------------AC 293

  Fly   546 PAPPRESSESSSSAAAAAVAAMSTPPNPFLMFRTAPSFFPGFPPYGFPPFLPQNPLHPTNIPMFF 610
            |...|..|:.||                                     .:....:|....|...
 Frog   294 PECGRRFSDKSS-------------------------------------LVKHKRIHTGEKPYKC 321

  Fly   611 SKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSESQAYDKVTEKELVFKAEEKLKKEPLVQAF 675
            |      .||.                ||  |:||....:.:...:|..|...|..|      ||
 Frog   322 S------DCGR----------------GF--GQNSYLVMHKRTHTEEKTFFCSECGK------AF 356

  Fly   676 EGEEDESRSSLDIKGKLEDTR-----------NDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSI 729
                      :|..|.|:..|           ...|...:.....:.:::.|             
 Frog   357 ----------MDEAGLLKHQRLHTGEKLFCCPTCGKGFTERSCLVKHQKIHT------------- 398

  Fly   730 DIMSTPPPADTPSGGDGPLDLSICRKRSAGSFFTAPAEDNLMLHRFMPRLHEFE-----AERGQP 789
                          |..|...|:|:|.     ||  .:.:|:.|:   |:|..|     :|.|  
 Frog   399 --------------GVKPHTCSVCKKS-----FT--EKSHLVKHQ---RIHTGEKPFSCSECG-- 437

  Fly   790 LKMRKSHSSAESSTSQKSHKGSSPTPTPTASPGLTPSPSPPTSAGGELSSTSEGGA--VPTMAAA 852
               ::...:|.....|::|.|.:|                        .|.||.|.  |.....|
 Frog   438 ---KQFVQNAHLIKHQRTHTGENP------------------------FSCSECGKRFVDKSNLA 475

  Fly   853 AFAADH------SALASGPTLPQTHPTFHPLLLEEIYRSGFPFLCQPGGRRGIEALLAGAASAAA 911
            ..:..|      |....|.:..|:.   |.|..:.::....||.|...|:     .....:|.:.
 Frog   476 MHSRTHTGDKPFSCSQCGKSFVQSS---HLLAHQRVHTGEKPFSCSECGK-----FFRDKSSLSK 532

  Fly   912 PKRPLPPVKFSAGSVVGLKTKDR-YSCKFCGKVFPRSANLTRHLRTHTGEQPYPCKYCDRAFSIS 975
            .||              :.|.:: :||..|||.|.::::|..|.|||||.:||.|..|.::||.:
 Frog   533 HKR--------------VHTGEKPFSCSECGKSFSQNSHLLTHQRTHTGLKPYSCSQCGKSFSDN 583

  Fly   976 SNLQRHVRNIHNKERPFRCELCDRSFGQQTNLDRHVKKHESE 1017
            |:|.:| |.:|...:||||..|.:.|.|::.|..|...|..:
 Frog   584 SSLVKH-RRLHTGLKPFRCLECGKCFSQKSYLIIHTSTHTGD 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 2/7 (29%)
C2H2 Zn finger 341..363 CDD:275368 6/21 (29%)
C2H2 Zn finger 371..392 CDD:275368 6/20 (30%)
SFP1 <391..479 CDD:227516 25/87 (29%)
C2H2 Zn finger 400..421 CDD:275368 6/20 (30%)
SUF4-like 403..>445 CDD:411020 11/41 (27%)
C2H2 Zn finger 403..421 CDD:411020 5/17 (29%)
C2H2 Zn finger 429..449 CDD:275368 7/19 (37%)
C2H2 Zn finger 457..477 CDD:275368 7/19 (37%)
C2H2 Zn finger 486..504 CDD:275368 6/17 (35%)
PTZ00121 <641..>728 CDD:173412 15/97 (15%)
COG5048 935..>1028 CDD:227381 34/83 (41%)
zf-C2H2 935..957 CDD:395048 9/21 (43%)
C2H2 Zn finger 937..957 CDD:275368 8/19 (42%)
zf-H2C2_2 949..973 CDD:404364 11/23 (48%)
C2H2 Zn finger 965..986 CDD:275368 8/20 (40%)
C2H2 Zn finger 994..1014 CDD:275368 6/19 (32%)
znf850XP_004918470.2 C2H2 Zn finger 99..119 CDD:275368 6/21 (29%)
C2H2 Zn finger 126..146 CDD:275368 6/19 (32%)
C2H2 Zn finger 155..175 CDD:275368 6/19 (32%)
C2H2 Zn finger 181..201 CDD:275368 7/19 (37%)
C2H2 Zn finger 209..229 CDD:275368 7/19 (37%)
C2H2 Zn finger 237..257 CDD:275368 7/19 (37%)
COG5048 261..640 CDD:227381 109/542 (20%)
C2H2 Zn finger 265..285 CDD:275368 6/19 (32%)
C2H2 Zn finger 293..313 CDD:275368 6/56 (11%)
C2H2 Zn finger 321..341 CDD:275368 8/43 (19%)
C2H2 Zn finger 349..369 CDD:275368 8/35 (23%)
C2H2 Zn finger 377..397 CDD:275368 1/19 (5%)
C2H2 Zn finger 405..425 CDD:275368 8/29 (28%)
C2H2 Zn finger 433..453 CDD:275368 4/24 (17%)
C2H2 Zn finger 461..481 CDD:275368 5/19 (26%)
C2H2 Zn finger 489..509 CDD:275368 4/22 (18%)
C2H2 Zn finger 517..537 CDD:275368 5/38 (13%)
C2H2 Zn finger 545..565 CDD:275368 8/19 (42%)
C2H2 Zn finger 573..593 CDD:275368 8/20 (40%)
C2H2 Zn finger 601..621 CDD:275368 6/19 (32%)
C2H2 Zn finger 629..649 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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