DRSC/TRiP Functional Genomics Resources

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Protein Alignment ham and prdm16

DIOPT Version :10

Sequence 1:NP_724130.4 Gene:ham / 35135 FlyBaseID:FBgn0045852 Length:1108 Species:Drosophila melanogaster
Sequence 2:XP_031761546.1 Gene:prdm16 / 100485690 XenbaseID:XB-GENE-991670 Length:1307 Species:Xenopus tropicalis


Alignment Length:1211 Identity:350/1211 - (28%)
Similarity:495/1211 - (40%) Gaps:391/1211 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 ELDIRDSG------GVYAKTPLQRGTRYGPFPMKLSHQPNDPQLAWKAHSRHYNGWLEPTEDVST 203
            :.::|:|.      |::||..::.|.|.||:.|.......:..|.|:.        :.|..||::
 Frog    83 DFELRESSIPGAGLGIWAKKKIEAGERLGPYIMMQKTTLKENNLGWEQ--------ILPESDVTS 139

  Fly   204 ----------------------------WLKKIRSVQDDCIGEANLQ-SYINAGYLWYETNRYVN 239
                                        |||.|| :...| .|.||. .|:|. .|.|:..:.:.
 Frog   140 QDGCLSKVSDELDNDKMCLENNQNGSWNWLKFIR-IACSC-DEQNLAVCYLNE-QLSYKVIKDIE 201

  Fly   240 AGSEMVVDGRPKSPVQLNEDFMNGGKVLAAAAAAAAAVVAASSSGAKSGGGGSSAPSDD-----R 299
            .|.|::|             :|..|..                      ..|:..|:.|     |
 Frog   202 PGEELLV-------------YMKEGNY----------------------SPGNMPPNIDEEHTFR 231

  Fly   300 SDRDNGSLYSGDEFSKDKK-------------NSSLIREGDIDFTDDENGFDIRCEVCDKVYPDL 351
            .:..:....|..:..:.:|             |..:.:||    .|:|...:  |:.|::.:|:.
 Frog   232 CEECDELFQSKLDLRRHQKYACTTVNHIYESLNEEIKQEG----FDNEQMHE--CKDCERPFPNK 290

  Fly   352 DLLDDHLIGAHHFKQDEFPCKQCALRFCHRPLLIKHEAISHNNIRKYSCENCSK----------- 405
            ..|:.|:|  .|.::.|:.|.||...|..:..||:|: :||::.:::.||||.|           
 Frog   291 YSLEQHMI--IHTEEREYKCDQCPKAFNWKSNLIRHQ-MSHDSGKRFECENCVKSESWVPSDLHP 352

  Fly   406 ----------------------VFCDPSNLQRHIRAYHVGARCHPCPECGKTFGTSSGLKQHQHI 448
                                  ||.||||||||||:.|||||.|.||:|||||.||||||||:||
 Frog   353 RLPLNLNCNNNTEAEEHTPKVDVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHI 417

  Fly   449 HSSVKPFAC---EVCSKAYTQFSNLCRHKRMHATCRMQIKCDKCNQSFSTLTSLTKHKKFCDSTG 510
            ||:||||.|   |||.|:|||||||||||||||.||.||||..|.|.|||.:||.||::||:.  
 Frog   418 HSTVKPFICIPGEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEG-- 480

  Fly   511 PGPYRNQHVNRHHQHPHQHPLPHQPHLAATATSTCPAPPRESSESSSSAAAAAVA---------- 565
                     ..|:.|         ..|.||.....|:...:.|:.|.:...:::|          
 Frog   481 ---------KNHYNH---------GGLFATGLPLTPSSLMDKSKPSPNLNHSSLAFNEYFPSRAH 527

  Fly   566 ----AMSTPPNPFLMFRTAPSFFPG-FPP--YGFPPFLPQNPL--HPTN---------------I 606
                |.|..|.||...  ||. ||| |||  |..||.||.:||  .|.|               |
 Frog   528 PGSLAFSPAPPPFPTL--APG-FPGIFPPALYPRPPLLPPSPLLKSPLNHTREAKLPSPIGNPSI 589

  Fly   607 PMFFSKNPMDLGCGGPEITSPVSAFDQKLPFGFLKGENSESQAYDKVTEKELVFKAEEKLKKEPL 671
            |:..|.|       .......||..|        |.|||...:|   .||       .|.:...|
 Frog   590 PLMSSLN-------SSNHNQQVSVED--------KFENSMENSY---LEK-------HKSRSSDL 629

  Fly   672 VQAFEGEEDESRSSLDIKGKLEDTRNDSKSEEQDDMKQEPERVSTPDQQQAEDDRKSIDIMST-- 734
            ....:.|:..:.|..|:     ||...:.|:...|:  :.||....::.:..::::  |::|:  
 Frog   630 SDGSDFEDVNTTSGTDL-----DTTTGTGSDLDSDV--DSERGKNKEKSKPVENKQ--DVVSSSV 685

  Fly   735 ---------------------PPPAD--TPSGG---DGPLDLSICRKRSAGSFFTAPAE---DNL 770
                                 |||.:  .||.|   |....::...::..|..|....|   .:|
 Frog   686 SRNLNNSLGERPFFYSQHSFFPPPEEQLLPSIGVANDSIKAIASIAEKYFGPGFMGMQEKKMGSL 750

  Fly   771 MLH-----RFMPRL--------------HEF--EAERGQPLKMRKSHSSAESSTSQKSHKGSSPT 814
            ..|     :|:|..              |..  :||...|..::|     ..|||.:|....:..
 Frog   751 PYHSMFPFQFLPNFPHSLYPAFTDRTMNHNLLVKAEPKSPRDLQK-----VGSTSSESPFDLTTK 810

  Fly   815 PTPTASPGLTPSPSPPTSAGGE---------LSSTSEGGAVPTMAAAAFA------------ADH 858
            |....|..:.|....|.|:|.|         .|..|:.||..|.....::            ...
 Frog   811 PKEIKSALIPPRVLAPQSSGEEQPLDLSISNRSRASQNGARETRRNHIYSDRKMMMNDMLSKIPQ 875

  Fly   859 SALASGPTLPQTHPTFHPLLLEEIYR-------------------SGFPFLCQPGGRRGIEALL- 903
            |.|...|.|....|:  |..::.||.                   ...|.|..| ....||.:. 
 Frog   876 SQLPQQPPLHYAKPS--PFFMDPIYSRVEKRKVTDPVGTMKEKYLRPSPLLFHP-QMSAIENMTE 937

  Fly   904 -----------AGAASAAAPKRPL----PPVKFSAGSVVGLKTKDRYSCKFCGKVFPRSANLTRH 953
                       .|::....|..|.    ||...| .|:: .|.|:||:|::|||:||||||||||
 Frog   938 KLENFANLKADTGSSLQPLPHHPFNFRSPPTTLS-DSIL-RKGKERYTCRYCGKIFPRSANLTRH 1000

  Fly   954 LRTHTGEQPYPCKYCDRAFSISSNLQRHVRNIHNKERPFRCELCDRSFGQQTNLDRHVKKHESEG 1018
            ||||||||||.||||||:||||||||||||||||||:||:|.||:|.||||||||||:||||.|.
 Frog  1001 LRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHEN 1065

  Fly  1019 -----------NNFRDSPSSSG--------IAEREE-YFDDIRKFM--NRVYTPNSLAGNEGDTE 1061
                       |:...|.||..        :.|:|: ||.:||.|:  :.:....|||....:.:
 Frog  1066 VPVSQHSGVITNHHGTSVSSPNSESENHALLDEKEDSYFSEIRNFIANSELNQTASLAEKRTEIQ 1130

  Fly  1062 EYPNS--------------DDQSVNLEKD--SGNFNNNSSN 1086
            :..:|              :::...||:|  .|:....|.:
 Frog  1131 DIDSSKCLSLVNQKPDDADEEEDDELEEDYEDGSLTGKSQD 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hamNP_724130.4 PR-SET_ZFPM 131..253 CDD:380978 31/142 (22%)
C2H2 Zn finger 341..363 CDD:275368 6/21 (29%)
C2H2 Zn finger 371..392 CDD:275368 7/20 (35%)
SFP1 <391..479 CDD:227516 67/123 (54%)
C2H2 Zn finger 400..421 CDD:275368 17/53 (32%)
SUF4-like 403..>445 CDD:411020 33/74 (45%)
C2H2 Zn finger 403..421 CDD:411020 14/50 (28%)
C2H2 Zn finger 429..449 CDD:275368 16/19 (84%)
C2H2 Zn finger 457..477 CDD:275368 17/22 (77%)
C2H2 Zn finger 486..504 CDD:275368 10/17 (59%)
PTZ00121 <641..>728 CDD:173412 18/86 (21%)
COG5048 935..>1028 CDD:227381 73/103 (71%)
zf-C2H2 935..957 CDD:395048 17/21 (81%)
C2H2 Zn finger 937..957 CDD:275368 16/19 (84%)
zf-H2C2_2 949..973 CDD:463886 21/23 (91%)
C2H2 Zn finger 965..986 CDD:275368 19/20 (95%)
C2H2 Zn finger 994..1014 CDD:275368 15/19 (79%)
prdm16XP_031761546.1 SET 61..222 CDD:394802 34/184 (18%)
C2H2 Zn finger 232..258 CDD:275368 2/25 (8%)
zf-C2H2 278..300 CDD:395048 6/25 (24%)
C2H2 Zn finger 280..300 CDD:275368 6/21 (29%)
zf-H2C2_2 292..316 CDD:463886 8/25 (32%)
C2H2 Zn finger 308..328 CDD:275368 7/20 (35%)
C2H2 Zn finger 336..387 CDD:275368 15/50 (30%)
zf-C2H2 396..418 CDD:395048 17/21 (81%)
C2H2 Zn finger 398..418 CDD:275368 16/19 (84%)
C2H2 Zn finger 426..449 CDD:275368 17/22 (77%)
C2H2 Zn finger 458..476 CDD:275368 10/17 (59%)
zf-C2H2 982..1004 CDD:395048 17/21 (81%)
C2H2 Zn finger 984..1004 CDD:275368 16/19 (84%)
zf-H2C2_2 996..1020 CDD:463886 21/23 (91%)
SUF4-like 1012..>1067 CDD:411020 45/54 (83%)
C2H2 Zn finger 1012..1038 CDD:411020 24/25 (96%)
C2H2 Zn finger 1012..1033 CDD:275368 19/20 (95%)
C2H2 Zn finger 1041..1062 CDD:411020 16/20 (80%)
C2H2 Zn finger 1041..1061 CDD:275368 15/19 (79%)

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