DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10348 and sp3

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_002934651.1 Gene:sp3 / 733736 XenbaseID:XB-GENE-977158 Length:750 Species:Xenopus tropicalis


Alignment Length:440 Identity:107/440 - (24%)
Similarity:162/440 - (36%) Gaps:149/440 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 TSSSSTSPTTTSATTTGRLQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLRLAHKRKTDL---VDQ 109
            |||||..|.|...  ||.||        |..|        |..|.|    ..|.:.:||   ..|
 Frog   290 TSSSSQLPVTIDG--TGMLQ--------QNAN--------SLTDSP----SGHVQTSDLHGNYIQ 332

  Fly   110 GPMEDENSNLIMFASELAVAQ---QKEKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGGGG 171
            ..|.||:.|:.:.||:..|.|   |..:..:...:..|:|       ::.::|::         |
 Frog   333 TSMTDESQNIQVSASQTMVQQIHLQDSQPTSQAQLVQSIA-------QQAIQAVQ---------G 381

  Fly   172 GGGGGGGGGPPN-------------APPLTP----------------------PQCSIPAVHPTL 201
            |..|.......|             |..:||                      |..|...:..|.
 Frog   382 GTQGLSSQALQNLQLQLNPGTFLIQAQTVTPSGQIAWQTFQVQGVQNLQNLQIPNSSAQQITLTP 446

  Fly   202 LEAMT------KNLPLQYRNVFAGVLPG----KVNSPAA----------SSSPTG---------- 236
            ::.:|      ...|:   ::.||.||.    .|||..|          |.|||.          
 Frog   447 VQTLTLGQVAGGGTPV---SLNAGQLPNLQTVTVNSVDAAGIHLHHGDNSDSPTEIETHQTRQHF 508

  Fly   237 -----ADFPFRHPLKKCELTWPPPTEQLQL---------ELPHPNPKLSPVLPHPQLQDYQTRRK 287
                 ::|..|  :|:.|    |..::.||         :|.|    |...:...:|.......|
 Frog   509 SSLQLSNFGIR--IKEEE----PDPDEWQLAGDSTVNTNDLTH----LRVQVVDDELDQPNQEGK 563

  Fly   288 NKARTAAT------GGNATPNLPQRNKDRYTCKF--CGKVFPRSANLTRHLRTHTGEQPYKC--K 342
            ...|.|.|      |.....||.:  |.::.|..  ||||:.::::|..|||.|:||:|:.|  .
 Frog   564 RLRRVACTCPNCKDGAGRGTNLGK--KKQHICHIPGCGKVYGKTSHLRAHLRWHSGERPFVCTWM 626

  Fly   343 YCERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHES 392
            :|.:.|:.|..|||| |..|..|:.|.|..|.:.|.:..:|.:|:|.|::
 Frog   627 FCGKRFTRSDELQRH-RRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQN 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 25/66 (38%)
zf-C2H2 311..333 CDD:278523 9/23 (39%)
C2H2 Zn finger 313..333 CDD:275368 9/21 (43%)
zf-H2C2_2 325..349 CDD:290200 10/25 (40%)
C2H2 Zn finger 341..362 CDD:275368 9/22 (41%)
zf-H2C2_2 353..377 CDD:290200 10/23 (43%)
zf-C2H2 368..390 CDD:278523 7/21 (33%)
C2H2 Zn finger 370..390 CDD:275368 6/19 (32%)
sp3XP_002934651.1 C2H2 Zn finger 593..615 CDD:275368 9/21 (43%)
zf-H2C2_2 607..634 CDD:372612 11/26 (42%)
C2H2 Zn finger 623..645 CDD:275368 9/22 (41%)
zf-H2C2_2 637..660 CDD:372612 10/23 (43%)
zf-C2H2 651..673 CDD:333835 7/21 (33%)
C2H2 Zn finger 653..673 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.