DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and PRDM9

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001297143.1 Gene:PRDM9 / 56979 HGNCID:13994 Length:894 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381
zf-C2H2 311..333 CDD:278523
C2H2 Zn finger 313..333 CDD:275368
zf-H2C2_2 325..349 CDD:290200
C2H2 Zn finger 341..362 CDD:275368
zf-H2C2_2 353..377 CDD:290200
zf-C2H2 368..390 CDD:278523
C2H2 Zn finger 370..390 CDD:275368
PRDM9NP_001297143.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
KRAB 27..85 CDD:214630
KRAB 27..62 CDD:279668
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..174
SSXRD 171..201 CDD:286586
SET 246..364 CDD:214614
S-adenosyl-L-methionine binding. /evidence=ECO:0000269|Ref.9 256..258
Substrate binding. /evidence=ECO:0000250|UniProtKB:Q96EQ9 288..294
S-adenosyl-L-methionine binding. /evidence=ECO:0000269|Ref.9 320..321
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 408..469
COG5048 <528..671 CDD:227381
C2H2 Zn finger 528..546 CDD:275368
C2H2 Zn finger 554..574 CDD:275368
zf-H2C2_2 566..590 CDD:290200
C2H2 Zn finger 582..602 CDD:275368
zf-H2C2_2 595..619 CDD:290200
C2H2 Zn finger 610..630 CDD:275368
COG5048 <611..878 CDD:227381
zf-H2C2_2 623..647 CDD:290200
C2H2 Zn finger 638..658 CDD:275368
zf-H2C2_2 651..674 CDD:290200
C2H2 Zn finger 666..686 CDD:275368
zf-H2C2_2 679..702 CDD:290200
C2H2 Zn finger 694..714 CDD:275368
zf-H2C2_2 707..731 CDD:290200
C2H2 Zn finger 722..742 CDD:275368
DNA-binding. /evidence=ECO:0000269|PubMed:26833727 730..820
zf-H2C2_2 734..757 CDD:290200
C2H2 Zn finger 750..770 CDD:275368
zf-H2C2_2 762..785 CDD:290200
C2H2 Zn finger 778..798 CDD:275368
zf-H2C2_2 790..815 CDD:290200
C2H2 Zn finger 806..826 CDD:275368
zf-H2C2_2 818..843 CDD:290200
C2H2 Zn finger 834..854 CDD:275368
zf-H2C2_2 846..870 CDD:290200
C2H2 Zn finger 862..882 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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