DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10348 and klf4

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001017280.1 Gene:klf4 / 550034 XenbaseID:XB-GENE-1015049 Length:407 Species:Xenopus tropicalis


Alignment Length:409 Identity:102/409 - (24%)
Similarity:153/409 - (37%) Gaps:116/409 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 ASSASVAATSSS----STSPTTTSA--TTTGRLQHQHSHQQHQ---TLNHHAKGKRRSSFDQPLD 95
            :||:|.:.|:||    :|.|.|.||  :||....:|....|..   ||.::|:....||      
 Frog    56 SSSSSSSVTASSPPPPATLPDTMSALSSTTCNFVYQVRCPQESSGGTLMYNARDPTMSS------ 114

  Fly    96 LRLAHKRKTDLVDQGPMEDENSNLIMFASELA--------VAQQKEKELNNNHI---AASLADLG 149
               |.....|:.|..|...       |.:||.        :.||.:..|....:   ..|:.|.|
 Frog   115 ---ATFNLADINDVSPSGG-------FVAELMRPDLDPVFMQQQPQASLQGKFVLKTTVSMGDYG 169

  Fly   150 FDMSRKMLRALREGGAGGGGGGGGGGGGGGGPPNAPPLTPPQCSIPAVHPTLLE----AMTKNLP 210
            ..:|      :|:..:|...                ||:.....:|.|...:.:    :.|...|
 Frog   170 QTIS------VRKNNSGIDS----------------PLSYTTHQLPRVCQKIKQEPSSSCTSACP 212

  Fly   211 L--------QYRNVFAG-VLPGKVNSPAASSSPTGAD-FPFRHPLKKCELTWPP----------- 254
            :        ..|...|| .||.:.|...:.....|.| ......|....|..||           
 Frog   213 MDGQGQQSQSMREFQAGRGLPIRTNQSLSPEELMGRDCHSSSQTLSHSSLPIPPAYHTSASFSHF 277

  Fly   255 PTEQLQLELPHPNPKLSPVLPHPQLQDYQTRRKNKARTAATGG---------NATPNLPQRNKDR 310
            .::|.|.:||            |....||       ....|||         ....:.|::....
 Frog   278 TSDQPQTQLP------------PTQLQYQ-------ELLTTGGCIPEESKPKRGRKSWPRKRTAT 323

  Fly   311 YTCKF--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKERPFKCE 371
            :||::  |||.:.:|::|..||||||||:||.|.:  |...|:.|..|.||.|. |...|||:|:
 Frog   324 HTCEYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWEGCGWKFARSDELTRHYRK-HTGHRPFQCQ 387

  Fly   372 ICERCFGQQTNLDRHLKKH 390
            .|:|.|.:..:|..|:|:|
 Frog   388 RCDRAFSRSDHLALHMKRH 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 26/66 (39%)
zf-C2H2 311..333 CDD:278523 10/23 (43%)
C2H2 Zn finger 313..333 CDD:275368 9/21 (43%)
zf-H2C2_2 325..349 CDD:290200 13/25 (52%)
C2H2 Zn finger 341..362 CDD:275368 8/22 (36%)
zf-H2C2_2 353..377 CDD:290200 11/23 (48%)
zf-C2H2 368..390 CDD:278523 8/21 (38%)
C2H2 Zn finger 370..390 CDD:275368 7/19 (37%)
klf4NP_001017280.1 zf-C2H2 324..348 CDD:333835 10/23 (43%)
C2H2 Zn finger 326..348 CDD:275368 9/21 (43%)
C2H2 Zn finger 356..378 CDD:275368 8/22 (36%)
zf-H2C2_2 370..395 CDD:372612 12/25 (48%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.