DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and pita

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:526 Identity:119/526 - (22%)
Similarity:187/526 - (35%) Gaps:129/526 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EKDHSPRKMLPSPKQGCVYPALGLIPTSYISHVPYDLASSAS------VAATSSSSTSPTTTSAT 61
            ||..:|..|:.| |:..|.||....|:.....:...:|.|:|      |....|:..:|.|.:.:
  Fly   104 EKPRAPMTMVAS-KKLLVVPAKTAEPSETPKKLLNTMAKSSSQVIIEDVQVLESAMVTPRTVAGS 167

  Fly    62 TTGRLQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLRLAHKRKTDLVDQGPMEDENSNLIMFASEL 126
                                :...|||.         |::.|.|...:..|:|..|.|...||||
  Fly   168 --------------------SPVPRRSH---------AYELKVDNNQELSMDDVQSMLEDMASEL 203

  Fly   127 A-----VAQQ----KEKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGGGGGGGGGGGGGPP 182
            .     :.|:    |.|.||.:.|                |.|.:|                  |
  Fly   204 EKEFPDIPQKASPVKPKVLNKSSI----------------RILNKG------------------P 234

  Fly   183 NAPPLTPPQCSIPAVH-------PTLLEAMTKNLPLQYRNVFAGVLPGKVNSPAASSSPTGADFP 240
            .||  ..|:.:.|.|.       ..:.|.:..:|||..:           :.|..::.....|. 
  Fly   235 AAP--VEPRLATPKVKRDDSGNVAIVTEVLDSDLPLDDQ-----------DDPTKNAEKVATDV- 285

  Fly   241 FRHPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQLQDYQTRRKNKARTAATGGNATPNLPQ 305
              .|...||.::  |.:|| ||:...|        |.:.:.:|.....|: ..:....|..|...
  Fly   286 --FPCPDCERSF--PLQQL-LEIHRLN--------HTRSRSFQCLLCEKS-FFSKYDLAKHNFVH 336

  Fly   306 RNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKC 370
            ..:..:.|..|.|.|.|.|.|.||.||||....:.|.|||:.|.....:::|... |.|:|||:|
  Fly   337 TGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAER-HQKKRPFQC 400

  Fly   371 EICERCFGQQTNLDRHLKKHESDAVSLSALSGVSERMHCIRRFCENPTEESYFEEIRSFMGKVTQ 435
            .:|.:.|..:..|:||...|.::.        .....||.|.|   .|.......:.:..||...
  Fly   401 GVCTKSFAFKQGLERHETVHSTNL--------PFPCQHCERSF---STASKLARHLVAHAGKRAY 454

  Fly   436 QQQQQQQQQQHDQQQQQHQSTATSASSS---CSSSRDTPTSSHEEADHAPATSTADTAAPSSSRD 497
            ..:...:.........:|..|.|..|.:   ||..:.:.::.::..|||...:||....|...:.
  Fly   455 PCKYCHKSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDLLDHALIHATASLKCPMCRKQ 519

  Fly   498 QEEEDS 503
            .|:.||
  Fly   520 IEDIDS 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 20/62 (32%)
zf-C2H2 311..333 CDD:278523 10/21 (48%)
C2H2 Zn finger 313..333 CDD:275368 10/19 (53%)
zf-H2C2_2 325..349 CDD:290200 11/23 (48%)
C2H2 Zn finger 341..362 CDD:275368 6/20 (30%)
zf-H2C2_2 353..377 CDD:290200 8/23 (35%)
zf-C2H2 368..390 CDD:278523 7/21 (33%)
C2H2 Zn finger 370..390 CDD:275368 6/19 (32%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 62/251 (25%)
C2H2 Zn finger 288..308 CDD:275368 8/30 (27%)
C2H2 Zn finger 316..336 CDD:275368 3/20 (15%)
zf-H2C2_2 328..353 CDD:290200 6/24 (25%)
C2H2 Zn finger 344..364 CDD:275368 10/19 (53%)
C2H2 Zn finger 372..388 CDD:275370 5/15 (33%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 5/22 (23%)
C2H2 Zn finger 456..476 CDD:275368 1/19 (5%)
C2H2 Zn finger 486..506 CDD:275368 5/19 (26%)
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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