DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and Prdm6

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_011245206.1 Gene:Prdm6 / 225518 MGIID:2684938 Length:607 Species:Mus musculus


Alignment Length:224 Identity:55/224 - (24%)
Similarity:84/224 - (37%) Gaps:63/224 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 PPQC-------SIPAVHPTLLEAMTKNLPLQYRNVFAGVLP-GKVNSPAASSSPTGADFP----- 240
            |.||       ::|:   |::|||.:...||..|..:.:.| |:..|.....:|...:|.     
Mouse   376 PLQCIAQDENLNVPS---TVMEAMCRQDALQPFNKSSKLSPSGQQRSVVFPQTPCSRNFSLLDKS 437

  Fly   241 ------FRHPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQLQDYQTRRKNKARTAATGGNA 299
                  |.....|.:.....||...||              |.:..|:..               
Mouse   438 GPMEAGFNQINVKNQRVLASPTSTSQL--------------HSEFSDWHL--------------- 473

  Fly   300 TPNLPQRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 364
                       :.|..|.|.|.:...|..|:.|...::||:|.:|.:|||..|.|:.||.. |:.
Mouse   474 -----------WKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVT-HSS 526

  Fly   365 ERPFKCEICERCFGQQTNLDRHLKKHESD 393
            :|||||..|.|.|...|.|:.|::.|..:
Mouse   527 DRPFKCGYCGRAFAGATTLNNHIRTHTGE 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 18/62 (29%)
zf-C2H2 311..333 CDD:278523 6/21 (29%)
C2H2 Zn finger 313..333 CDD:275368 6/19 (32%)
zf-H2C2_2 325..349 CDD:290200 8/23 (35%)
C2H2 Zn finger 341..362 CDD:275368 9/20 (45%)
zf-H2C2_2 353..377 CDD:290200 11/23 (48%)
zf-C2H2 368..390 CDD:278523 9/21 (43%)
C2H2 Zn finger 370..390 CDD:275368 7/19 (37%)
Prdm6XP_011245206.1 PR-SET_PRDM6 245..373 CDD:380968
C2H2 Zn finger 476..496 CDD:275368 6/19 (32%)
zf-C2H2 502..524 CDD:333835 10/22 (45%)
C2H2 Zn finger 504..524 CDD:275368 9/20 (45%)
zf-H2C2_2 516..540 CDD:372612 11/24 (46%)
zf-C2H2 530..552 CDD:333835 9/21 (43%)
C2H2 Zn finger 532..552 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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