DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and Prdm16

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_038967290.1 Gene:Prdm16 / 100366024 RGDID:2324431 Length:1276 Species:Rattus norvegicus


Alignment Length:564 Identity:172/564 - (30%)
Similarity:228/564 - (40%) Gaps:164/564 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EKDHSPRKMLPSPKQGCVYPALGLIPTSYISHVPYDLASSASVAATSSSSTSPTTTSATTTGRLQ 67
            ||...|..|....|:....|...:.|..::.:.|:.|              .|.|..|     |.
  Rat   702 EKYFGPGFMSMQEKKLGSLPYHSVFPFQFLPNFPHSL--------------YPFTDRA-----LA 747

  Fly    68 HQHSHQQHQTLNHHAKGKRRS----------SFDQPLDLRLAHKR--------KTDLVDQGPMED 114
            |          |...|.:.:|          |.:.|.||....|.        |..||   |...
  Rat   748 H----------NLLVKAEPKSPRDALKVGGPSAECPFDLTTKPKEAKPALLTPKAPLV---PSSG 799

  Fly   115 ENSNLIMFASELAVAQQK--EKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGGGGGGGGGG 177
            |...|.:.....|.|.|.  .:|...|||..         .||                  .|.|
  Rat   800 EEQPLDLSIGSRARASQNGGSREPRKNHIYG---------ERK------------------PGVG 837

  Fly   178 GGGPPNAPPLTPPQCSIPAVHPTLLEAMTKNLPLQYRNVFAGVLPGKVNSPAASSSPTGADFPFR 242
            .|.|...|...|.|   |::|      ..|..|.....:::.|...||      :.|.|.     
  Rat   838 EGLPKVCPAQLPQQ---PSLH------YAKPSPFFMDPIYSRVEKRKV------ADPVGV----- 882

  Fly   243 HPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQLQDYQT---RRKNKARTAATGGNATPNLP 304
              ||:..|                  :.||:|.|||:...:|   :.::.|...|..|::...||
  Rat   883 --LKEKYL------------------RPSPLLFHPQMSAIETMTEKLESFAAMKADSGSSLQPLP 927

  Fly   305 ------------------QRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 351
                              ::.|:||||::|||:||||||||||||||||||||:||||:||||||
  Rat   928 HHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSIS 992

  Fly   352 SNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSLSALSGVSERMHCIRRFCEN 416
            ||||||||||||||:||||.:|.|||||||||||||||||.:...:|..|||... | :.....:
  Rat   993 SNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHEGAPVSQHSGVLTN-H-LGTSASS 1055

  Fly   417 PT------------EESYFEEIRSFMGKVTQQQQQQQQQQQHDQQQQQHQSTATSASSSCSSSRD 469
            ||            |:|||.|||:|:......|...:..::.:.|..........::|  :...|
  Rat  1056 PTSESDNHALLDEKEDSYFSEIRNFIANSEMNQASTRMDKRPEVQDLDGNPPCPGSAS--AKQED 1118

  Fly   470 TPTSSHEEA-----DHAPATSTADTAAPSSSRD---QEEEDSQP 505
            ......||.     |.....|..||.:|:....   ::|||.:|
  Rat  1119 VEEEEEEELEEEDDDSLAGKSQEDTVSPTPEPQGVYEDEEDEEP 1162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 50/80 (63%)
zf-C2H2 311..333 CDD:278523 18/21 (86%)
C2H2 Zn finger 313..333 CDD:275368 16/19 (84%)
zf-H2C2_2 325..349 CDD:290200 21/23 (91%)
C2H2 Zn finger 341..362 CDD:275368 19/20 (95%)
zf-H2C2_2 353..377 CDD:290200 19/23 (83%)
zf-C2H2 368..390 CDD:278523 18/21 (86%)
C2H2 Zn finger 370..390 CDD:275368 16/19 (84%)
Prdm16XP_038967290.1 PR-SET_PRDM16 61..222 CDD:380990
C2H2 Zn finger 232..252 CDD:275368
zf-C2H2 282..304 CDD:395048
C2H2 Zn finger 284..304 CDD:275368
zf-H2C2_2 296..320 CDD:404364
zf-C2H2 310..332 CDD:395048
C2H2 Zn finger 312..332 CDD:275368
zf-C2H2 338..359 CDD:395048
C2H2 Zn finger 340..358 CDD:275368
zf-C2H2 367..389 CDD:395048
C2H2 Zn finger 369..389 CDD:275368
zf-C2H2 395..417 CDD:395048
C2H2 Zn finger 397..417 CDD:275368
C2H2 Zn finger 426..444 CDD:275368
zf-C2H2 952..974 CDD:395048 18/21 (86%)
C2H2 Zn finger 954..974 CDD:275368 16/19 (84%)
zf-H2C2_2 966..990 CDD:404364 21/23 (91%)
SUF4-like 982..>1016 CDD:411020 29/33 (88%)
C2H2 Zn finger 982..1008 CDD:411020 24/25 (96%)
C2H2 Zn finger 982..1003 CDD:275368 19/20 (95%)
zf-C2H2 1009..1031 CDD:395048 18/21 (86%)
C2H2 Zn finger 1011..1031 CDD:275368 16/19 (84%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I10947
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D254483at33208
OrthoFinder 1 1.000 - - FOG0002720
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24393
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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