DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and prdm4

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001116215.1 Gene:prdm4 / 100000537 ZFINID:ZDB-GENE-041210-131 Length:822 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381
zf-C2H2 311..333 CDD:278523
C2H2 Zn finger 313..333 CDD:275368
zf-H2C2_2 325..349 CDD:290200
C2H2 Zn finger 341..362 CDD:275368
zf-H2C2_2 353..377 CDD:290200
zf-C2H2 368..390 CDD:278523
C2H2 Zn finger 370..390 CDD:275368
prdm4NP_001116215.1 SET 403..509 CDD:279228
COG5048 <532..752 CDD:227381
C2H2 Zn finger 607..627 CDD:275368
zf-C2H2 633..655 CDD:278523
C2H2 Zn finger 635..655 CDD:275368
zf-H2C2_2 647..672 CDD:290200
C2H2 Zn finger 663..683 CDD:275368
zf-C2H2 690..711 CDD:278523
C2H2 Zn finger 691..711 CDD:275368
C2H2 Zn finger 719..739 CDD:275368
C2H2 Zn finger 747..766 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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