DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Irk3 and kcnj4

DIOPT Version :9

Sequence 1:NP_001137835.2 Gene:Irk3 / 35131 FlyBaseID:FBgn0032706 Length:446 Species:Drosophila melanogaster
Sequence 2:XP_002934259.1 Gene:kcnj4 / 100485222 XenbaseID:XB-GENE-493748 Length:442 Species:Xenopus tropicalis


Alignment Length:355 Identity:131/355 - (36%)
Similarity:201/355 - (56%) Gaps:17/355 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 PDLGSGPRTSSS----DGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKYMLT 157
            |.||:....:||    ...|:..||.::|||:.||.|..:..||.|||.|:.||.::..|:|||.
 Frog    22 PSLGANGNWTSSLHHPHSRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLL 86

  Fly   158 LFLGSYFLSWLLFAALCYVVAYSHGDF--IFDPVSGKRMGEGVDPCIYGVHSWVAMIIYSVETQT 220
            :|..::..|||.||.|.:.:|:.|||.  ....::|.|.|. ..||:..|:|:|...::||||||
 Frog    87 IFSATFLASWLFFAFLFWCIAFLHGDLGTSSGVIAGGRQGP-PKPCLMHVNSFVEAFLFSVETQT 150

  Fly   221 TLGFGEKYASEECPETIFLFVMQMLSAALIEGCMVSVIYAKTARPARQLTKLKFSDKAVICYRDG 285
            |:|:|.:..::|||..|...|.|.:...||:..|:..|.||.|||.::...|.||..|||..|||
 Frog   151 TIGYGFRCVTDECPLAILAVVAQSILGCLIDSFMIGTIMAKMARPKKRAQTLLFSHHAVIALRDG 215

  Fly   286 RLCLLFRVCDPREQQSIESKIRVYIIVDKRTREGETI---KSHVELKLEGNGEQIIL-WPDVVCH 346
            :|||::||.:.|:...:|:.:|..:|....|:|||.:   :..:.:..:...::|.| .|.::.|
 Frog   216 KLCLMWRVGNLRKSHIVEAHVRAQLIRPYVTQEGEYLPVDQRDLNVGYDSGLDRIFLVSPIIIVH 280

  Fly   347 VIDETSPLSQFTTAK-LFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVNIIHYDA 410
            .|||.|||  :|..| ......||:.|.:.|...|||..|:|::|||..||.||.||..:: ::.
 Frog   281 EIDEESPL--YTMGKEQLEGEDFEIVVILEGMVEATAMTTQARSSYLASEIRWGHRFEPVV-FEE 342

  Fly   411 QNERYIVDYENFNRTISV-DMPMTNPKNDH 439
            :| .|.|||.:|::|..| ..|:.:.:..|
 Frog   343 KN-HYKVDYSHFHKTYQVPGTPVCSARELH 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Irk3NP_001137835.2 Ion_trans_2 119..432 CDD:304432 121/320 (38%)
kcnj4XP_002934259.1 IRK_N 1..47 CDD:369890 7/24 (29%)
IRK 48..195 CDD:366415 59/147 (40%)
IRK_C 202..372 CDD:375232 62/174 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D289862at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11767
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.