DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Faf2 and faf1

DIOPT Version :9

Sequence 1:NP_001286057.1 Gene:Faf2 / 35129 FlyBaseID:FBgn0025608 Length:464 Species:Drosophila melanogaster
Sequence 2:NP_998138.2 Gene:faf1 / 406243 ZFINID:ZDB-GENE-040426-2863 Length:675 Species:Danio rerio


Alignment Length:471 Identity:121/471 - (25%)
Similarity:196/471 - (41%) Gaps:121/471 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 VLNDRFLQQVFSANMPGGRTVSRV--------------------PSGPVPRSFTGIIGYVINFVF 113
            |::.|..|:.:|.|.|..:|:..|                    |:.....|.|..|.   ...:
Zfish   223 VISHREAQRDYSLNFPASKTIQEVKRNISDLTNIPVRHQQWDGWPASATDDSMTLAIS---GISY 284

  Fly   114 QYFYSTLTSIVSAFVNLGGGNE---ARLVTDPLGD------------------------------ 145
            ...:.|:....|..:.:...:|   ..:|:|..||                              
Zfish   285 PCHHLTVCRRSSPALTVDQTDECTDVHMVSDSEGDDFEDAPEFGVDESEIFGMGSSSCRKSPMMP 349

  Fly   146 ---------VMKFIREYYERYPE-HPVFYQGTYAQALNDA----KQELRFLIVYLHKDPAKNPDV 196
                     ::.|..|:..||.: |||||.|:...|..:|    .::.:.|.:|||.|.:...:|
Zfish   350 ENSENEGDALLHFTAEFSRRYGDCHPVFYIGSLEAASQEAFYGKARDRKLLAIYLHNDESVLSNV 414

  Fly   197 ESFCRNTLSARSVIDYINTHTLLWGCDVATPE--------------GYRVMQSITVRSYPT---- 243
              ||...:.|.|::.|::.:.:.|..|| |.|              |..|.|  |:|:|.|    
Zfish   415 --FCSQMMCADSIVSYLSQNFITWAWDV-TKEANKARLLTMCTRHFGSVVAQ--TIRTYKTDQFP 474

  Fly   244 ---MVMISLRANRMMIVGRFEGDCTPEELLRRLQSVTNANEVWLSQAR---ADRLERNFTQTLRR 302
               :||....:|.::.|  .:|:.|.:||:.||.   .|.|::.:|.:   .|..||...:.::|
Zfish   475 LLLIVMGKRTSNEVLNV--IQGNTTVDELMMRLM---GAMEIFTAQQQEDIKDEDEREAREMVKR 534

  Fly   303 QQDEAYEQSLLADEEK-ERQRQRERDAVRQAEEAVEQARRDVELRKEEIARQKIELATLVPSEPA 366
            :|||||..||.||.:| |.|.:.|.:.|||     |:.|::.|..:|.|   ::.|...:|.||.
Zfish   535 EQDEAYRVSLEADRKKREAQEREEAEQVRQ-----ERIRKEQEEEREAI---RLSLEQALPPEPK 591

  Fly   367 ADAVGAIAVV-FKLPSGTRLERRFNQTDSVLDVYHYLFCHPDSPDEFEITTNFPKRVLFSKANLD 430
            .:....|:.: .:.|||..|||||..|..:..::.::.......|||::.|.||:|.:   ..||
Zfish   592 EEGGEPISKLRIRTPSGEFLERRFLGTCKLQVLFDFVASKGYPSDEFKLLTTFPRRNI---TQLD 653

  Fly   431 AAGETGTAK----ETL 442
            .|.....||    |||
Zfish   654 PAWNLVEAKLFPQETL 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Faf2NP_001286057.1 UBA_FAF2 12..49 CDD:270597
UAS_ETEA 163..280 CDD:239289 38/141 (27%)
ATP-synt_B <287..>373 CDD:304375 29/89 (33%)
UBQ 373..462 CDD:294102 25/75 (33%)
faf1NP_998138.2 UBA_FAF1 16..48 CDD:270596
UBL 134..196 CDD:176364
UAS_FAF1 377..512 CDD:239288 40/144 (28%)
Faf1_UBX 595..674 CDD:176366 25/78 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2328
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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