DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msl-1 and msl1b

DIOPT Version :9

Sequence 1:NP_001286054.1 Gene:msl-1 / 35121 FlyBaseID:FBgn0005617 Length:1039 Species:Drosophila melanogaster
Sequence 2:XP_021336014.1 Gene:msl1b / 563262 ZFINID:ZDB-GENE-030131-4491 Length:529 Species:Danio rerio


Alignment Length:549 Identity:121/549 - (22%)
Similarity:205/549 - (37%) Gaps:125/549 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   500 PKQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQEDVRK--------- 555
            |.|..|...|         |.|:..|.....|..::.......|:....|.:..|:         
Zfish    22 PSQTRHPVSA---------QRELRDPLCDTPDDTREHLISQKNLERASLPSKPGRELIVASEAGS 77

  Fly   556 VQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKDAPAQKVIANHQSTKTQTDPV 620
            |..|||..|    .|.:.....|..:||       |...|..|.:.|....:.:|.:::   |||
Zfish    78 VGTETLSSQ----AKQMGGEGTPVKSKT-------PFGQTNAIDNKPEFVSMNSHINSR---DPV 128

  Fly   621 KTQRLQVKIRQYEMHPDMRTGSSAPSDIRKQKNVDPVS-TPETKTIKSKSMLVNDK---KTTSET 681
            .           |.:.....|||......|:.|:..:| .|..:....|.:|:...   :...:.
Zfish   129 G-----------EKNAKETMGSSHEHSEGKRTNMKKISGNPHAQATCLKQLLLLQLDLIEQQQQQ 182

  Fly   682 SQSPDQEID------------VETVRRKLAEHLKKELLSQSHSSQVTLKKIRERVATNLIYP--- 731
            .||.|:|||            :|.:.|:|      :|||         |:.|::   .|..|   
Zfish   183 LQSKDKEIDELKSDRDTLLARIERMERRL------QLLS---------KEPRDK---RLFQPLER 229

  Fly   732 --PPSAPVSSTTITPAPTPSTTPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNS- 793
              |.:.....:.:..:|....:.:.|...:        :::||.::|::.:...::..|||.:. 
Zfish   230 WVPDTDDFWESDLGDSPQTQASKSSGKVQK--------RKLSATETKTQRSRGKSSRTTPQKSDT 286

  Fly   794 ---SVSSTTSTIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRT------WE--DQEFHC 847
               |........::|....|....|:.|.:..:..|.......||.|.|      ||  |.....
Zfish   287 RGPSPCQRELRSKETPEKASTGKSSRKTDQHAEEGSSKEADELPYMTTTEMYLCCWEPPDSSLQE 351

  Fly   848 D---------NEFFLEEADELLAD-------NPSLEIPKWRDVPVPP--SSDKID-TELLSDATF 893
            |         ::|.::..:.|...       .....:|.||:..:.|  ..|..| .|.|.|:.|
Zfish   352 DCPKKEEDVASKFLVQIQNALFKRWFTNCYVKTIFPVPSWRENIMEPLKEEDAADLPESLDDSVF 416

  Fly   894 ERRHQKYVKDEVDRKCRDARYMKEQIRLEQL--RMRRNQDEVLVALDPLRASTFYPLPEDIEAIQ 956
            .:||.|...||..||..|.:.::||..|::|  ||.:.:..|:...:| ..|:|:|..|::|||.
Zfish   417 LKRHAKLELDEKRRKRWDIQRIREQRMLQRLQQRMEKKKPNVVQESEP-EVSSFHPDLENVEAIM 480

  Fly   957 FVNEVTVQAFGENVVNMEARDDFGVPWVD 985
            ....:.|.|||..:.|:..: :|.:||:|
Zfish   481 VTPFLPVVAFGRPLPNLTPQ-NFELPWLD 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msl-1NP_001286054.1 PEHE 867..983 CDD:291924 39/120 (33%)
msl1bXP_021336014.1 PEHE 388..506 CDD:317651 39/119 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578062
Domainoid 1 1.000 61 1.000 Domainoid score I10457
eggNOG 1 0.900 - - E1_2CMD8
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR21656
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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