DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tos and xpg-1

DIOPT Version :9

Sequence 1:NP_477145.1 Gene:tos / 35119 FlyBaseID:FBgn0015553 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_491891.2 Gene:xpg-1 / 186441 WormBaseID:WBGene00019004 Length:820 Species:Caenorhabditis elegans


Alignment Length:703 Identity:131/703 - (18%)
Similarity:251/703 - (35%) Gaps:234/703 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDV-YIQYCLKYVN 64
            ||||||...|...::::.|:.:.|..:|:|...|:::.      :||...|... :::..:..::
 Worm     1 MGITGLWKIVEPTATEIPLECLEGKKLAIDVSIWIYQA------QLAYPSDQPFPHLRLLVNRLS 59

  Fly    65 MLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELL----RLGRIEEARSHMRRCVDV 125
            .||.|.|:|:.||||..:|.   .:::..::|:|.::...::|    ::|:::|..|      ..
 Worm    60 KLLFYKIRPVFVFDGPQVPP---LKRQVLEARRQKRQNDDDILKNSKKMGKLKEIAS------GG 115

  Fly   126 THDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGAKNIIFKLDLNG 190
            ..|:||                             |:..:.:|:....:.|    |.|:| |:..
 Worm   116 LDDVAL-----------------------------ANAIKEVISPSKKVIL----NDIYK-DIPS 146

  Fly   191 SGLLVEAEKLH----LAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDM 251
            :...::....|    |..|..|:             |..|..|.:           |:.|.:|: 
 Worm   147 TSTYLDKPSAHQNDQLVYGNIED-------------SDSDDSDII-----------IVPTVKEE- 186

  Fly   252 RIALK------KIPSYLN----MRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDY 306
            ||:.:      :|.|.:.    |||..:..|.|....|:.:.|           :||||.     
 Worm   187 RISKQFTSRKLEIQSLVEKREIMRNSRLRPDMIPQDSKSFSNF-----------QMQRLL----- 235

  Fly   307 ETDERYCSNAGTLLEDSEQALHLALGNLNPFSMKRLDSWTPEKAWPTPKNVKRSKHKSIWQTNFQ 371
                    ..|.|..:.||.......:...:|..:::...|:   .|...:|.:....|.:...:
 Worm   236 --------RRGRLNAEIEQLAKSTTTSTGGYSSDKINVTGPD---GTSHILKYAHSDEIQEVRPE 289

  Fly   372 SENTHTPKKENPCA--LFFKKVDFVGKTLNEEIEANQRLEQAKQTEAELFNMYSFKAKRRRSPSR 434
            .:.......:.|.:  |.|..|::.||.|:.|:..:.                          .|
 Worm   290 LKRDIDSLYQEPLSMTLDFFNVEYGGKKLSREVTPDD--------------------------VR 328

  Fly   435 EDSVD--QERTPPPSPVHKSRHNPFAKERTGEEANQRSPVVCENASLLRLLSPKKASPLDGEAGV 497
            |:.||  :||.             ..|:..|.::         .:.:|..::.|:   :....|.
 Worm   329 EEIVDRLEERL-------------IDKKERGYQS---------KSGMLEAIARKR---IRQHYGT 368

  Fly   498 KKVDSLKRSIFAKEQVQIRSRFFATQDEQTRLQREHLRDTENDDMDEQKLSSHSGHKKLRLVCKD 562
            :.|:..|.....|::.:|........|::..|| |.|.:|....:| ::::|...||        
 Worm   369 ETVEDKKEEEKRKKEQRIEDDMIEVSDDEMVLQ-EVLLETAAKSLD-KRMASLEKHK-------- 423

  Fly   563 IPGKNPIRQRCSSQISDGETDTD---------TTASSLLE---------SQDKGVPSPLESQEDL 609
            :|.:            |.|.:.|         ::|.:|:|         ..||......:.||.|
 Worm   424 VPSE------------DEEIEWDPQRYDKPSTSSAPALMEDYIHLNYSDEDDKTPELYRDLQEFL 476

  Fly   610 NNSQ-PQIPTEGNTNSTTIRIKSLDLLLENSPEPTQESDRNNNDAIILLSDDS 661
            .|:. |.|.:.|...:..:.::.|.|:                |.::  ||||
 Worm   477 TNAGIPWIESPGEAEAQCVELERLGLV----------------DGVV--SDDS 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tosNP_477145.1 PIN_EXO1 1..204 CDD:189027 43/211 (20%)
H3TH_EXO1 214..291 CDD:188628 17/86 (20%)
xpg-1NP_491891.2 PIN_SF 1..>111 CDD:301351 29/118 (25%)
PIN_SF <449..548 CDD:301351 18/81 (22%)
H3TH_XPG-like 554..>586 CDD:188620
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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