DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43338 and C27D6.1

DIOPT Version :9

Sequence 1:NP_001246080.1 Gene:CG43338 / 35117 FlyBaseID:FBgn0263079 Length:853 Species:Drosophila melanogaster
Sequence 2:NP_001352249.1 Gene:C27D6.1 / 182964 WormBaseID:WBGene00016160 Length:645 Species:Caenorhabditis elegans


Alignment Length:666 Identity:139/666 - (20%)
Similarity:257/666 - (38%) Gaps:166/666 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 QLDTSCSNTGITVTEHHHGLDLTTTLRSELAALSYKKERLTGELAEARAALCSKDA-----DIEN 111
            |||.| |...:|.|.:..|..:|||||...:  .||:   .|:.:.:|..|.|.|:     .|..
 Worm    29 QLDLS-SEALVTSTLNIRGNKITTTLRPRTS--PYKR---AGDASMSREDLRSPDSVAATYTIRE 87

  Fly   112 LRAQAARQTAL-IGSLQSRLQNSESREQAVQARCDSTIQTVQREKRSSDERNKELICKIQHLETH 175
            .|::  |||.: :.||:.||:.:|...:.::|..:.......|..:...|...||...:|..|..
 Worm    88 NRSE--RQTKVKLESLERRLKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEW 150

  Fly   176 MASE---ESQKEQIKAQLHDLLRRLS--------------ITLGMDVCDGNQNSHATPECIISRA 223
            ....   |.|.:|:..:|:::.::|.              .||.:|. :..||.....:..:|:.
 Worm   151 QVKSQEMEIQNKQLVEELNEVQKKLEEIENSQKTFHQKVVSTLNLDE-EYFQNPDEEQDGSLSQF 214

  Fly   224 EEVMVELQRTKAKVSSTCDTLSSCENELLNLKSLANIEKQRLTAQLDGAGNH------------- 275
            .  |..|::...|....|.:|.. |||:|..|      .|:|::.|....||             
 Worm   215 N--MDVLEQEIVKYQEKCISLKQ-ENEILKEK------LQQLSSSLTVNQNHVSTLMDHLEINKE 270

  Fly   276 -NHELEGRCRQYERDLQIQRDR---------LTESEINGEKLKEELRGFESRCHRL--------- 321
             :.|::|.|:   :::.|::|.         |..|.||.:|::.|:...|.||.|.         
 Worm   271 QSREIQGICK---KEIAIRQDHENRINHDVTLLNSLINEQKMELEMLKAEIRCLRSYSQEMSQSN 332

  Fly   322 QNN---LDRTQGDRLQFLRGLSNLLNVPEPC-ETLIKDKLREILAENQAMHA-QMHSLRDQLNSE 381
            :||   |...:.:|...|..|:.|||..|.. |..:|..:|:::.|...... :..:.:...|:|
 Worm   333 KNNIILLKSAETERKSLLETLTVLLNSEEEATENNVKRTIRDLVRERDTEQTKRFEAEKAASNAE 397

  Fly   382 HEKLKETQQTTEC--RLRSGEAQKCELTERLEKCHAEIHTLRKDHMGLSEFLQRLALAMNWGECS 444
            ...|::.:|....  |.|..|.:..:..|::|:...|:.....:...|...:..|...::    .
 Worm   398 GVLLEQAKQQRNALFRARVSEEEYSKSMEKIEELEQELLASDLERKNLEHKIASLENCIS----K 458

  Fly   445 APPALGTDTNLMAENLLERAERLAAHCDHEAPHHHHHHHSPDKGCCDHGHGHGKLRRERSCHDIP 509
            ....|..:...:.:.:.:|.|.|.|                                :.|.:.:.
 Worm   459 VSQLLNVNVGGVFDAIFDRIEELIA--------------------------------QESVYRVV 491

  Fly   510 LKESSSVYNLQRRVRVLREQVQRRDLHLELLRRKLAIIEDGARGKCMLQGERDEAVCRAKKAAK- 573
            :.|:          |::.|.:.|   .|:.:|:      |...||.....::.:.......||| 
 Worm   492 VNEN----------RLISENIFR---GLQSVRK------DFQSGKSGGGSDKKQPASPVAAAAKI 537

  Fly   574 -----------QVDKLSAQLADARSQIAEVKAQLAEAVEYKITSLERARKIDELTTQICDLEDEK 627
                       ::|||:..|      :|.:..:..:|.:.:.|:|:  ::::|...:|..||.||
 Worm   538 IQERHTLKTIDKMDKLNKDL------LATMTIETLKAADIEKTNLK--KRMNEQDARIRQLEREK 594

  Fly   628 TRLLSQLNALKERLKS 643
            ..        .||::|
 Worm   595 KE--------GERIRS 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43338NP_001246080.1 SMC_prok_B <77..412 CDD:274008 89/396 (22%)
SMC_prok_A 305..>644 CDD:274009 67/367 (18%)
C27D6.1NP_001352249.1 SMC_N <86..480 CDD:330553 85/412 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157892
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG50021
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR18863
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.040

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