DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10333 and Gem3

DIOPT Version :9

Sequence 1:NP_609888.2 Gene:CG10333 / 35112 FlyBaseID:FBgn0032690 Length:822 Species:Drosophila melanogaster
Sequence 2:NP_001261678.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:446 Identity:127/446 - (28%)
Similarity:206/446 - (46%) Gaps:77/446 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 TIKGGR------IPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETG 441
            ::.||.      .|..::::.|....:.:::.:.:..:..||.||..|||:.|...|:|..:::|
  Fly     8 SLAGGEERSSDVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSG 72

  Fly   442 SGKTLAFLIPLLSWIQSL-PKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTV-- 503
            :||||.::|.:   :||. |.|.:       |:|:|:.||||||.|:::  |.|......|..  
  Fly    73 TGKTLIYVIAV---VQSFNPNINQ-------PHAMIVVPTRELAIQVQD--TFFHLCKSFRDFKC 125

  Fly   504 -VVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDV 566
             ..:||....:...|:. ...::|.|||||:.:.|||...:::...:||||||::.. ...:..|
  Fly   126 SAFIGGTDVAKDRKRMN-ESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTV 189

  Fly   567 QKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAV-ERLARTYLRRP---- 626
            .|::|.||                         |.||.:..:||....: ||||:. :.:|    
  Fly   190 SKLIEAMP-------------------------KNRQIIACSATYDQNLDERLAKV-MDKPMLIS 228

  Fly   627 ----ATVYIGSVGKPTERTEQIVYMMGE-----NDKRKKLM---EILSRKIDPPVIIFVNQKKGA 679
                |||.:|        ..|.||.:.:     .:.|.||.   :|.::......|||.:.:..|
  Fly   229 NSERATVLLG--------IRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRA 285

  Fly   680 DVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMA 744
            |.....|...|.:...:.|...|.:|.:.....::....||||||:..||:|....:||||.|..
  Fly   286 DSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPP 350

  Fly   745 KTIEDYTHRIGRTGRAGKTGCAISFV-TKDDSALFYDL-KQCVSASPVSTCPPELM 798
            :....|.|||||.||.|..|.||:|: :|.:|..|.:: |:..:|..|...|.|.|
  Fly   351 QDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKEPM 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10333NP_609888.2 DEADc 396..629 CDD:238167 68/246 (28%)
DEXDc 409..632 CDD:214692 69/236 (29%)
Helicase_C 651..761 CDD:278689 36/112 (32%)
Gem3NP_001261678.1 SrmB 24..541 CDD:223587 124/430 (29%)
P-loop_NTPase 27..228 CDD:304359 67/239 (28%)
Helicase_C 259..367 CDD:278689 35/107 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451724
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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