DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10333 and Ddx41

DIOPT Version :9

Sequence 1:NP_609888.2 Gene:CG10333 / 35112 FlyBaseID:FBgn0032690 Length:822 Species:Drosophila melanogaster
Sequence 2:NP_001101516.1 Gene:Ddx41 / 314336 RGDID:1311758 Length:622 Species:Rattus norvegicus


Alignment Length:612 Identity:207/612 - (33%)
Similarity:319/612 - (52%) Gaps:107/612 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 KPDRRERGGGRDRGDRIDRGERGDDKRAEDLTHKDKEKE-------LEAIRERYLGIIKKKRRVR 268
            :|:|:     |.|.:....|    ..|:||   :|::.|       |...|:..|..:.::||..
  Rat     5 EPERK-----RARTNEATAG----GSRSED---EDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKG 57

  Fly   269 RLNDRKFVFDWDAGEDTSIDYNNLYKERHHVQFFGRGNVAGID----IKEQKRTQSKFYGDLLEK 329
            ...:.:    .|:|.:...|.::       :....:.||:.:|    :||:...:.:   ...||
  Rat    58 AAEEEQ----QDSGSEPRGDEDD-------IPLGPQSNVSLLDQHQHLKEKAEARKE---SAKEK 108

  Fly   330 RRTEAEKEQEKV-------RLKKMKR---KED--KQKWDDRHWSEKENDEMTERDWRIFREDYNV 382
            :..|.||..|.|       .:|:|.:   .:|  |..|....:....::|..||    .|:.|::
  Rat   109 QLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHER----VRKKYHI 169

  Fly   383 TIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 447
            .::|..||.||:|:.|...|..|:..:.|.|...|||||.|.||..|..||:||:|.|||||||.
  Rat   170 LVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLV 234

  Fly   448 FLIPLLSWI----QSLPKIERLEDVDQGPYAIIMAPTRELAQQ-----------IEEETTKFGQP 497
            |.:|::.:.    :.||..:|     :|||.:|:.|:||||:|           ::|:::    |
  Rat   235 FTLPVIMFCLEQEKRLPFSKR-----EGPYGLIICPSRELARQTHGILEYYCRLLQEDSS----P 290

  Fly   498 LGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF 562
            | :|..:.:||:|.:||...:|.|..:::||||||:|:|:.:.:.|:.|.|:.||||||||||||
  Rat   291 L-LRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354

  Fly   563 EPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPA 627
            |.|::.|..|.                         |..|||::|:||||..::..|::.|.:|.
  Rat   355 EGDIRTIFSYF-------------------------KGQRQTLLFSATMPKKIQNFAKSALVKPV 394

  Fly   628 TVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYN 692
            |:.:|..|..:....|.|..:.|..|...|:|.| :|..|||:||..:|...|.:.:.|...|..
  Rat   395 TINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL-QKTPPPVLIFAEKKADVDAIHEYLLLKGVE 458

  Fly   693 SCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRT 757
            :..:||||.||:|..|:.|.:.|.||:|||||||.:|:|...:..||||||.:.||:|.||||||
  Rat   459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRT 523

  Fly   758 GRAGKTGCAISFVTK--DDSALFYDLK 782
            ||:|.||.|.:|:.|  |:|.|. |||
  Rat   524 GRSGNTGIATTFINKACDESVLM-DLK 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10333NP_609888.2 DEADc 396..629 CDD:238167 91/247 (37%)
DEXDc 409..632 CDD:214692 89/237 (38%)
Helicase_C 651..761 CDD:278689 52/109 (48%)
Ddx41NP_001101516.1 DEADc 183..397 CDD:238167 92/248 (37%)
DEXDc 196..409 CDD:214692 91/247 (37%)
Helicase_C 418..527 CDD:278689 52/109 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183201at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.