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Protein Alignment amos and Twist1
DIOPT Version :9
Sequence 1: | NP_477446.1 |
Gene: | amos / 35110 |
FlyBaseID: | FBgn0003270 |
Length: | 198 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_445982.1 |
Gene: | Twist1 / 85489 |
RGDID: | 621455 |
Length: | 203 |
Species: | Rattus norvegicus |
Alignment Length: | 93 |
Identity: | 36/93 - (38%) |
Similarity: | 50/93 - (53%) |
Gaps: | 5/93 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 109 KLSTSMSSSTSSASSSSSSSAGFGG----EVLKKRRLAANARERRRMNSLNDAFDKLRDVVPSLG 169
|.|...............||:|.|. |.|:.:|:.||.|||:|..|||:||..||.::|:|.
Rat 76 KKSAGGGGGAGGGGGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLP 140
Fly 170 HDRRLSKYETLQMAQAYIGDLVTLLSRD 197
.| :|||.:||::|..||..|..:|..|
Rat 141 SD-KLSKIQTLKLAARYIDFLYQVLQSD 167
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
amos | NP_477446.1 |
HLH |
137..195 |
CDD:238036 |
26/57 (46%) |
Twist1 | NP_445982.1 |
HLH |
110..160 |
CDD:278439 |
25/50 (50%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
1 |
1.050 |
66 |
1.000 |
Inparanoid score |
I5260 |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.960 |
|
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