DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amos and Twist1

DIOPT Version :9

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_445982.1 Gene:Twist1 / 85489 RGDID:621455 Length:203 Species:Rattus norvegicus


Alignment Length:93 Identity:36/93 - (38%)
Similarity:50/93 - (53%) Gaps:5/93 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 KLSTSMSSSTSSASSSSSSSAGFGG----EVLKKRRLAANARERRRMNSLNDAFDKLRDVVPSLG 169
            |.|...............||:|.|.    |.|:.:|:.||.|||:|..|||:||..||.::|:|.
  Rat    76 KKSAGGGGGAGGGGGGGGSSSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLP 140

  Fly   170 HDRRLSKYETLQMAQAYIGDLVTLLSRD 197
            .| :|||.:||::|..||..|..:|..|
  Rat   141 SD-KLSKIQTLKLAARYIDFLYQVLQSD 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 HLH 137..195 CDD:238036 26/57 (46%)
Twist1NP_445982.1 HLH 110..160 CDD:278439 25/50 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 66 1.000 Inparanoid score I5260
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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