DRSC/TRiP Functional Genomics Resources

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Protein Alignment amos and olig3

DIOPT Version :9

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_001103863.1 Gene:olig3 / 566728 ZFINID:ZDB-GENE-080903-1 Length:255 Species:Danio rerio


Alignment Length:162 Identity:47/162 - (29%)
Similarity:64/162 - (39%) Gaps:57/162 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 SDSQSDGANSCSLE-MYYDTPSVLELEHMLNAQEQQQHHLQANPLGKNQGRSPRYWNKQQRSKPY 107
            |||.|..::|..:: ||:              .....||.|                        
Zfish     3 SDSSSSRSSSPDMDGMYH--------------HHHHHHHHQ------------------------ 29

  Fly   108 DKLSTSMSSSTSS-----ASSSSSSSAGFGGEVLKKR---------RLAANARERRRMNSLNDAF 158
            |.|..|:||:.:.     ||...|.:.......|||:         ||..|.|||:||:.||.|.
Zfish    30 DGLLNSVSSTQNELLQKMASEHLSKTPSGSKYKLKKQVTEQEIQQLRLKINGRERKRMHDLNLAM 94

  Fly   159 DKLRDVVPSLGHD---RRLSKYETLQMAQAYI 187
            |.||:|:| ..|.   |:|||..||.:|:.||
Zfish    95 DGLREVMP-YAHGPSVRKLSKIATLLLARNYI 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 HLH 137..195 CDD:238036 28/63 (44%)
olig3NP_001103863.1 HLH 76..129 CDD:278439 26/51 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578670
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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