DRSC/TRiP Functional Genomics Resources

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Protein Alignment amos and HLH54F

DIOPT Version :10

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_477302.1 Gene:HLH54F / 37027 FlyBaseID:FBgn0022740 Length:242 Species:Drosophila melanogaster


Alignment Length:98 Identity:34/98 - (34%)
Similarity:50/98 - (51%) Gaps:14/98 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 PRYWNKQQRSKPYDKLSTSMSSSTSSASSSSSSSAGFGGEVLKKRRLAANARERRRMNSLNDAFD 159
            ||   |::.|.|.:..........||.||..           ..:|.|||||||.||..|:.|:.
  Fly     2 PR---KKRSSSPTEFFDDDFDEDASSQSSQP-----------PVQRNAANARERMRMRVLSSAYG 52

  Fly   160 KLRDVVPSLGHDRRLSKYETLQMAQAYIGDLVT 192
            :|:..:|::..|.:|||.:||::|..||..|:|
  Fly    53 RLKTKLPNIPPDTKLSKLDTLRLATLYIKQLIT 85

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 bHLH_TS_amos_like 132..195 CDD:381558 25/61 (41%)
HLH54FNP_477302.1 bHLH_TS_musculin_like 32..87 CDD:381429 25/54 (46%)

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