DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amos and Olig2

DIOPT Version :9

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_001094027.1 Gene:Olig2 / 304103 RGDID:1307098 Length:323 Species:Rattus norvegicus


Alignment Length:95 Identity:42/95 - (44%)
Similarity:56/95 - (58%) Gaps:14/95 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 PYDKL--------STSMSSSTSSASSSSS--SSAGFGGEVLKKRRLAANARERRRMNSLNDAFDK 160
            |.|||        |:|.|||||||::||:  .........|::.||..|:|||:||:.||.|.|.
  Rat    66 PGDKLGGGGFKSSSSSTSSSTSSAATSSTKKDKKQMTEPELQQLRLKINSRERKRMHDLNIAMDG 130

  Fly   161 LRDVVPSLGHD---RRLSKYETLQMAQAYI 187
            ||:|:| ..|.   |:|||..||.:|:.||
  Rat   131 LREVMP-YAHGPSVRKLSKIATLLLARNYI 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 HLH 137..195 CDD:238036 26/54 (48%)
Olig2NP_001094027.1 bHLH_TS_OLIG2 95..179 CDD:381510 27/66 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339097
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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