DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amos and neurog1

DIOPT Version :9

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_571116.1 Gene:neurog1 / 30239 ZFINID:ZDB-GENE-990415-174 Length:208 Species:Danio rerio


Alignment Length:88 Identity:36/88 - (40%)
Similarity:46/88 - (52%) Gaps:15/88 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 SSSTSSASSSSSSSAGFGGE---------------VLKKRRLAANARERRRMNSLNDAFDKLRDV 164
            :|..||.....:|.||...:               |.|.|||.||.|||.||::||||.|.||.|
Zfish    32 ASPASSCGKPPASPAGLQQKKRRRGRARNETTVHVVKKNRRLKANDRERNRMHNLNDALDALRSV 96

  Fly   165 VPSLGHDRRLSKYETLQMAQAYI 187
            :|:...|.:|:|.|||:.|..||
Zfish    97 LPAFPDDTKLTKIETLRFAHNYI 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 HLH 137..195 CDD:238036 29/51 (57%)
neurog1NP_571116.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..62 6/29 (21%)
CCDC106 <20..>102 CDD:292422 27/69 (39%)
HLH 68..127 CDD:238036 29/52 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..180
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578668
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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