DRSC/TRiP Functional Genomics Resources

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Protein Alignment amos and Olig3

DIOPT Version :9

Sequence 1:NP_477446.1 Gene:amos / 35110 FlyBaseID:FBgn0003270 Length:198 Species:Drosophila melanogaster
Sequence 2:NP_001099739.1 Gene:Olig3 / 293012 RGDID:1305997 Length:273 Species:Rattus norvegicus


Alignment Length:153 Identity:47/153 - (30%)
Similarity:68/153 - (44%) Gaps:27/153 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 STSDSQSDGANSCSL-EMYYDTPSVLELEHMLNAQEQQQHHLQ---ANPLGKNQGRSPRYWNKQQ 102
            |.|.|.|..|:|..: |||           :.:...:..||.|   .|.:...||       ...
  Rat     3 SDSSSVSSRASSPDMDEMY-----------LRDHHHRHHHHHQESRLNSVSSTQG-------DMV 49

  Fly   103 RSKPYDKLSTSMSSSTSSASSSSSSSAGFGGEVLKKRRLAANARERRRMNSLNDAFDKLRDVVPS 167
            :..|.:.||.: .:..:..||..........:.|::.||..|.|||:||:.||.|.|.||:|:| 
  Rat    50 QKMPGESLSRA-GAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMP- 112

  Fly   168 LGHD---RRLSKYETLQMAQAYI 187
            ..|.   |:|||..||.:|:.||
  Rat   113 YAHGPSVRKLSKIATLLLARNYI 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amosNP_477446.1 HLH 137..195 CDD:238036 26/54 (48%)
Olig3NP_001099739.1 bHLH_TS_OLIG3 70..150 CDD:381511 27/67 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339099
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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