DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde11 and pde4b

DIOPT Version :9

Sequence 1:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster
Sequence 2:XP_031756141.1 Gene:pde4b / 780324 XenbaseID:XB-GENE-963512 Length:733 Species:Xenopus tropicalis


Alignment Length:636 Identity:143/636 - (22%)
Similarity:257/636 - (40%) Gaps:142/636 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   594 LARMIFEEQS-------TIEHMVFRILTHMQSLIQCQRVQIL-LVHEADKGSFSRVFDFEANDLS 650
            ::|:..:|.|       |:|.:.:       .|.|.:.:|.. .|.|.....|.|:.:.|...||
 Frog   203 ISRVNLQEDSYQKIAMDTLEELDW-------CLDQLETIQTYRSVSEMASNKFKRMLNRELTHLS 260

  Fly   651 EEEATSRTSPYESRFPINIGITGHVATTGETVNVPNAYEDDRFDASVDENSCFKHRSILCMAIKN 715
            |   .||:....|.:     |:.........|.:|:..:.||      |..  |.:.::.     
 Frog   261 E---MSRSGNQVSEY-----ISSTFLDKQNDVEIPSPTQKDR------EKK--KKQQLMT----- 304

  Fly   716 SLGQIIGVIQLINKFNELDFTKNDENFVEAFAIFCGMGIHNTHMYEKAIVAMAKQSVTL-EVLSY 779
               ||.||.:|::. :.|:.|.     :..|    |:......|..|.:..:.|..:.: :|.||
 Frog   305 ---QISGVKKLMHS-SSLNNTS-----MSRF----GVKTEYEDMLSKELEDLNKWGLNIFKVASY 356

  Fly   780 HASATMDEAHRLRRLRVPSAVHFRLHDFKFDDIHFEDDDTLKACL--RMFLDLDFVERFHIDYEV 842
            ..:..:                                    .|:  .:|.:.|.::.|.|..:.
 Frog   357 SCNRPL------------------------------------TCIMYAIFQERDLLKTFKIPADT 385

  Fly   843 LCRWLLSVKKNYR-NVTYHNWRHAFNVAQMMFAILTTTQWWKIFGEIECLALIIGCLCHDLDHRG 906
            |..:.::::.:|. :|.|||..||.:|.|....:|:|.....:|.::|.||.|.....||:||.|
 Frog   386 LITYTMTLEDHYHSDVAYHNSLHAADVTQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPG 450

  Fly   907 TNNSFQIKASSPLAQLYS-TSTMEHHHFDQCLMILNSPGNQILANLSSDDYCRVIRVLEDAILST 970
            .:|.|.|..:|.||.:|: .|.:|:||......:|......|..||:......:.:::.|.:|:|
 Frog   451 VSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQNLTKKQRQSLRKMVIDMVLAT 515

  Fly   971 DLAVYFKKRGPF--LESVSQPTSYWVA-----EEPRALLRAMSMTVC-DLSAITKPWEIEKRVAD 1027
            |::.:.......  :....:.||..|.     .:...:||  :|..| |||..||..|:.::..|
 Frog   516 DMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLR--NMVHCADLSNPTKSLELYRQWTD 578

  Fly  1028 LVSSEFFEQGDMEKQE-LNITPIDIMNREKEDELPMMQVNFIDSICLPIYEAFATLSDKLEP--- 1088
            .:..|||:|||.|::. :.|:|   |..:....:...||.|||.|..|::|.:|   |.::|   
 Frog   579 RIMEEFFQQGDKERERGMEISP---MCDKHTASVEKSQVGFIDYIVHPLWETWA---DLVQPDAQ 637

  Fly  1089 -LVEGVRDNRGHWIDLADVVKTKTSQDQEPEEEQQQQNVISNGDCKAMSDD---DVAASEAEVAV 1149
             :::.:.||| :|      .::...|...|..::..:      ||:.:|:.   ::...|.:   
 Frog   638 DILDTLEDNR-NW------YQSMIPQSPSPLLDEHDK------DCQGLSEKFHFELTLEEED--- 686

  Fly  1150 DSPSEKASVNGSNVANNSSNTNKKIAVASHPTSTQPSDDDNDVDAD--ADD 1198
               |:....:|..::..||.....|.       .|..:|..|.|.:  .||
 Frog   687 ---SDGHDKDGDCLSFYSSTKTLHIV-------DQGMEDSPDADTEFLTDD 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde11NP_001286044.1 GAF 420..582 CDD:214500
GAF 611..762 CDD:214500 31/151 (21%)
PDEase_I 859..1094 CDD:278654 73/248 (29%)
pde4bXP_031756141.1 PDE4_UCR 164..279 CDD:407935 20/90 (22%)
PDEase_I 403..644 CDD:395177 73/248 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.