DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde11 and pde1a

DIOPT Version :9

Sequence 1:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster
Sequence 2:XP_005167982.1 Gene:pde1a / 564465 ZFINID:ZDB-GENE-090831-2 Length:611 Species:Danio rerio


Alignment Length:596 Identity:141/596 - (23%)
Similarity:248/596 - (41%) Gaps:99/596 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   714 KNSLGQIIGVIQLINK--FNELDFTKNDENFVEAFAIFCGMGIHNTHMY---EKAIVAMAKQSVT 773
            ||:..::..:::.::|  .|.:|..||.|   .|.::...:.|..|...   |..:..:...||.
Zfish    37 KNTSQRLRCLVKQLDKGEVNVVDLRKNIE---YAASVLEAVYIDETRRLLDTEDELSDIQADSVP 98

  Fly   774 LEVLSYHASATMDEAHRLRR---------------------------------LRVPSAVHFRLH 805
            :||..:.||....:...:||                                 |..|.:|...|.
Zfish    99 MEVRDWLASTFTRKMGVVRRRPEEKPRFRSIVHAVQAGIFVERMYRRTSNMAGLTYPPSVITALK 163

  Fly   806 D---FKFDDIHFED---DDTLKACL-RMFLDLDFVERFHIDYEVLCRWLLSVKKNY---RNVTYH 860
            |   :.||....::   |..||..: .:....|.:.||.|....|..::.:::..|   || .||
Zfish   164 DVDKWSFDVFKLQEASSDHALKFLVYELLTRYDLISRFRIPVSSLVSFVEALEIGYSKHRN-PYH 227

  Fly   861 NWRHAFNVAQMMFAILTTTQWWKIFGEIECLALIIGCLCHDLDHRGTNNSFQIKASSPLAQLYS- 924
            |..||.:|.|....::..|.......|:|.||::.....||.:|.||.|:|.|:..|.:|.||: 
Zfish   228 NLIHAADVTQTAHYLMLHTGVMHWLTELEILAMVFAAAIHDFEHTGTTNNFHIQTRSEVAILYND 292

  Fly   925 TSTMEHHHFDQCLMILNSPGNQILANLSSDDYCRVIRVLEDAILSTDLAVYFKKRGPFLESVSQP 989
            .|.:|:||......::......||.|||.||:..:..::.:.::|||::.:|::......|:.||
Zfish   293 RSVLENHHVSAAYRLMQEDEMNILVNLSKDDWRELRTLVIEMVMSTDMSCHFQQIKTMRNSLQQP 357

  Fly   990 TSYWVAEEPRALLRAMSMTVCDLSAITKPWEIEKRVADLVSSEFFEQGDMEKQELNITPIDIMNR 1054
            ..   .::.:||  ::.:...|:|...|.|::..|....:..|||.|||.| .||.: |...:..
Zfish   358 EG---IDKAKAL--SLMLHAADISHPAKGWKLHYRWTQALMEEFFRQGDKE-AELGL-PFSPLCD 415

  Fly  1055 EKEDELPMMQVNFIDSICLPIYEAFATLSDK-LEPLVE------GVR----DNRGHWIDLADVVK 1108
            .|...:...|:.|||.|..|.:......::| :.||:|      |||    ..||.    |.|| 
Zfish   416 RKATMIAQSQIGFIDFIVEPTFSVLVDTTEKIISPLIEEAVKSGGVRRSSLTGRGS----AAVV- 475

  Fly  1109 TKTSQDQEPEEEQQQQNVISNGDCKAMSDDDVAASEAEVAVDSPSEKASVNGSNVANNSSNTNKK 1173
                     |..|:..:..||.:|...:|..:.      .:|....:..:  |.:..|:....|:
Zfish   476 ---------ESVQRHSDRGSNDECGGSTDYSLC------GIDQKHVRHLL--SEIIQNNKERWKE 523

  Fly  1174 IAVASHPTSTQPSDDDNDVDADADDVDEQAAEENGHDAE---VDEASCRSNSTCSSSTASSCLST 1235
            ::|  ...:.:..:..:|:..:.....:....:..||:|   ::|.: .::||.||..:....|.
Zfish   524 LSV--QELANKQHERMSDLQEEPMRSTQLTLSQENHDSESKSLNELN-NTDSTHSSQDSLDQSSQ 585

  Fly  1236 PPPTGEDDSTP 1246
            .|..|..|::|
Zfish   586 SPTEGAGDASP 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde11NP_001286044.1 GAF 420..582 CDD:214500
GAF 611..762 CDD:214500 11/52 (21%)
PDEase_I 859..1094 CDD:278654 71/242 (29%)
pde1aXP_005167982.1 PDEase_I_N 85..141 CDD:285672 9/55 (16%)
PDEase_I 226..442 CDD:278654 66/222 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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