DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde11 and Pde6c

DIOPT Version :9

Sequence 1:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster
Sequence 2:NP_001101992.1 Gene:Pde6c / 361752 RGDID:1309844 Length:861 Species:Rattus norvegicus


Alignment Length:809 Identity:260/809 - (32%)
Similarity:424/809 - (52%) Gaps:85/809 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 LKQLDEKELIFELVKDICNEL-EVRTLCHKILQNVSILLNADRGSLFLVQGRCNGPDGLKKCLVS 461
            :.|::|..|..||::.:.:|. ....:.|:.||.::.||.|:..|:|    .|...:|:.: :.|
  Rat    53 MTQVEESALCLELLQHMQDETGSAEQVAHRALQRLARLLQAECCSMF----SCRSRNGIPE-VAS 112

  Fly   462 KLFDVCPRSTVEE--MEQQDEVRVAWGTGIAGHVAESGEPVNIPDAYQDERFNCEIDSLTGYRTK 524
            :|.:|.|.|..|:  :....||......||.|.||...:.:|:.:..::..|:..:|..|||.|:
  Rat   113 RLLNVTPTSKFEDNLVAPNREVVFPLDIGIVGWVAHVKKALNVSNVKKNSHFSDFMDKQTGYVTR 177

  Fly   525 ALLCMPIKDSSGDVIGVAQVINKMNGECFSEIDEKVFSSYLQFCGIGLR---NAQLYEKSQLEIK 586
            .||.:||. :..:|:.|...:||:|...||:.||:|||.||.|..|.||   .:.||   .:|.:
  Rat   178 NLLAVPIM-TGKEVLAVVMAVNKINAPEFSKQDEEVFSKYLSFVAIALRLQHTSYLY---SVESR 238

  Fly   587 RNQVLLDLARMIFEEQSTIEHMVFRILTHMQSLIQCQRVQILLVH------------------EA 633
            |:|:|:..|..:|||.:.:|....:.|..:::.:.|:|..|.|:.                  |.
  Rat   239 RSQILMWSANKVFEELTDVERQFHKALYTVRTYLNCERYSIGLLDMTKEKEFYDEWPIKLGEVEP 303

  Fly   634 DKGS---------FSRVFDFEANDLSEEEATSRTSPYESRFPINIGITGHVATTGETVNVPNAYE 689
            .||.         |.::.|:..:  .:||.:...||....:.:..|:..::|..|...|:.||..
  Rat   304 YKGPKTPDGREIIFYKIIDYILH--GKEEISVIPSPPADHWTLVSGLPTYIAENGFICNMMNAPA 366

  Fly   690 DDRF---DASVDENSCFKHRSILCMAIKNSLGQIIGVIQLINKFNELDFTKNDENFVEAFAIFCG 751
            |:.|   ...|||.. :..:::|.:.|.|....|:||....|:.:...|.::||:..|....|.|
  Rat   367 DEYFTFQKGPVDETG-WVIKNVLSLPIVNKKEDIVGVATFYNRKDGKPFDEHDEHITETLTQFLG 430

  Fly   752 MGIHNTHMYEKAIVAMAKQSVTLEVLSYHASATMDEAHRLRRLR--------------------- 795
            ..:.||..||:.....:::.:..|::.....||..|...:.:.:                     
  Rat   431 WSLLNTDTYERVNKLESRKDIAQEMIMNLTKATPSEISSILKFKEKLNIDVIEECEERQLLAILK 495

  Fly   796 --VPSAVHFRLHDFKFDDIHFEDDDTLKACLRMFLDLDFVERFHIDYEVLCRWLLSVKKNYRNVT 858
              :|......|::|:|.|....:.:.:|..||:||:::.||:|.:..|||.||:.:|:|.||.||
  Rat   496 EELPDPRAADLYEFRFSDFPVTEHELVKCGLRLFLEINVVEKFKVPVEVLTRWMYTVRKGYRPVT 560

  Fly   859 YHNWRHAFNVAQMMFAILTTTQWWKIFGEIECLALIIGCLCHDLDHRGTNNSFQIKASSPLAQLY 923
            ||||||.|||.|.||.:|.|.:..|.:.::|..|::....|||:|||||||.:|:|::||||:|:
  Rat   561 YHNWRHGFNVGQTMFTLLMTGRLKKYYTDLEAFAMLAAAFCHDIDHRGTNNLYQMKSTSPLARLH 625

  Fly   924 STSTMEHHHFDQCLMILNSPGNQILANLSSDDYCRVIRVLEDAILSTDLAVYFKKRGPFLESV-- 986
            .||.:|.||.:....:|......|..|||...:..||.:.|.||::||||:|||||..|.:.|  
  Rat   626 GTSILERHHLEYSKTLLQDESLNIFQNLSKRQFETVIHLFEVAIIATDLALYFKKRTMFQKIVDT 690

  Fly   987 ------SQPTSYWVAEEP--RALLRAMSMTVCDLSAITKPWEIEKRVADLVSSEFFEQGDMEKQE 1043
                  .:.|..:|..:|  :.::.||.||.|||||||||||::.:...||::||:||||:|:..
  Rat   691 CEQMQSEEETIKYVTADPTKKEVIMAMMMTACDLSAITKPWEVQSQATLLVANEFWEQGDLERTV 755

  Fly  1044 LNITPIDIMNREKEDELPMMQVNFIDSICLPIYEAFATLSDKLEPLVEGVRDNRGHWIDLADVVK 1108
            |...||.:|:|.|:.|||.:||.|||.:|..:|:.|:....::.|::.|:::||..|..||:..:
  Rat   756 LQQQPIPMMDRNKKGELPKLQVGFIDFVCTFVYKEFSRFHGEITPMLTGLQNNRVEWKSLAEEYE 820

  Fly  1109 TKTSQDQEPEEEQQQQNVISNGDCKAMSD 1137
            .|....:  ||..:|:.|.|:|  ||.:|
  Rat   821 AKVKVTE--EEVGKQEEVTSDG--KAATD 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde11NP_001286044.1 GAF 420..582 CDD:214500 54/166 (33%)
GAF 611..762 CDD:214500 41/180 (23%)
PDEase_I 859..1094 CDD:278654 106/244 (43%)
Pde6cNP_001101992.1 GAF 81..232 CDD:214500 52/156 (33%)
GAF 256..443 CDD:214500 43/189 (23%)
PDEase_I 561..806 CDD:278654 106/244 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347753
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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