DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde11 and Pde3b

DIOPT Version :9

Sequence 1:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster
Sequence 2:NP_058925.2 Gene:Pde3b / 29516 RGDID:61943 Length:1111 Species:Rattus norvegicus


Alignment Length:628 Identity:121/628 - (19%)
Similarity:217/628 - (34%) Gaps:183/628 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   711 MAIKNSLGQIIGVIQLINKFNELDFTKNDENFVEAFAIFCGMGI--------------HNTHMYE 761
            :.:..|||.:         .:..||.:...|...:....||..|              ||....|
  Rat   534 VTLHRSLGSV---------SSAADFHQYLRNSDSSLCSSCGHQILKYVSTCEPDGTDHHNEKSGE 589

  Fly   762 KAIVAMAKQSVTLEVLSYHASATMDE----------AHRLRRLRVPSAVHFRLHDFKFDDIHFED 816
            :.....:|:  .|.::......|:.|          .|.:...:.|:..    .:...|.:..||
  Rat   590 EDSTVFSKE--RLNIVETQEEETVKEDCRELFLEGDDHLMEEAQQPNID----QEVLLDPMLVED 648

  Fly   817 DDTL---------------------------KACLRMFLDLDFVERFHIDYEVLCRWLLSVKKNY 854
            .|:|                           :....:|.|...:|.|.|..:....:..:::..|
  Rat   649 YDSLIEKMSNWNFQIFELVEKMGEKSGRILSQVMYTLFQDTGLLETFKIPTQEFMNYFRALENGY 713

  Fly   855 RNVTYHNWRHAFNVAQMMFAILT-------------TTQWW------------------------ 882
            |::.|||..||.:|...::.:.|             .|:..                        
  Rat   714 RDIPYHNRVHATDVLHAVWYLTTRPIPGLQQLHNNHETETKADSDARLSSGQIAYLSSKSCCIPD 778

  Fly   883 KIFG-------EIECLALIIGCLCHDLDHRGTNNSFQIKASSPLAQLYS-TSTMEHHHFDQCL-M 938
            |.:|       .:|.:||.:....||.||.|..|:|.:..::|.|.||: .|.:|:||..... :
  Rat   779 KSYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNL 843

  Fly   939 ILNSPGNQILANLSSDDYCRVIRVLEDAILSTDLAVYFKKRGPFLESVSQPTS---YWVAEEPRA 1000
            .|:.|....|.||...::.|...::.:|||:|||..:|:....|....:...|   .|.:|..|.
  Rat   844 YLSRPEYNFLLNLDHMEFKRFRFLVIEAILATDLKKHFEFLAEFNAKANDVNSNGIEWSSENDRL 908

  Fly  1001 LLRAMSMTVCDLSAITKPWEIEKRVADLVSSEFFEQGDMEKQELNITPIDIMNREKEDELPMMQV 1065
            |:..:.:.:.|::...|..::..|..:.:.:||:|||| |:..|.: ||.........:|..:|.
  Rat   909 LVCQVCIKLADINGPAKDRDLHLRWTEGIVNEFYEQGD-EEATLGL-PISPFMDRSSPQLAKLQE 971

  Fly  1066 NFIDSICLPI---YEAFATLSDKLEPLVEGVRDNRGHWIDLADVVKTKTSQDQEPEEEQQQQNVI 1127
            :||..|..|:   |:|...|.              |.||:..:...|::..|.:.:::....:  
  Rat   972 SFITHIVGPLCNSYDAAGLLP--------------GQWIEAEEGDDTESDDDDDDDDDDDDDD-- 1020

  Fly  1128 SNGDCKAMSDDDVAASE------------------------------AEVAVDSPSEKASVNGSN 1162
             :.|.:.:..||....:                              .|:..:....||..|...
  Rat  1021 -DDDDEELDSDDEETEDNLNPKPQRRKGRRRIFCQLMHHLTENHKIWKEIIEEEEKCKAEGNKLQ 1084

  Fly  1163 VANNSSNTNKKIAVASHPTSTQPSDDDNDVDADADDVDEQAAE 1205
            |.|                ::.|..|:..|..:||:.:||..|
  Rat  1085 VDN----------------ASLPQADEIQVIEEADEEEEQMFE 1111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde11NP_001286044.1 GAF 420..582 CDD:214500
GAF 611..762 CDD:214500 11/64 (17%)
PDEase_I 859..1094 CDD:278654 69/286 (24%)
Pde3bNP_058925.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32
Interaction with RAPGEF3. /evidence=ECO:0000250 1..32
DUF3488 145..>264 CDD:403269
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 405..448
Interaction with PIK3R6. /evidence=ECO:0000250 421..445
PDEase_I 718..992 CDD:395177 68/275 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347768
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.850

Return to query results.
Submit another query.