DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde11 and pde6c

DIOPT Version :9

Sequence 1:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster
Sequence 2:XP_002937230.1 Gene:pde6c / 100485634 XenbaseID:XB-GENE-487059 Length:853 Species:Xenopus tropicalis


Alignment Length:805 Identity:254/805 - (31%)
Similarity:420/805 - (52%) Gaps:75/805 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 LSRNELKQLDEKELIFELVKDICNELEVRTLCHKILQNVSILLNADRGSLFLVQGRCNGPDGLKK 457
            :|..|:.:::|.:::.||:|:|.::..:....||:||.::.||.||..|:|..:.|...|:    
 Frog    48 VSFREMTKIEEADILLELIKEIQDDCNMEKTVHKVLQRMAYLLQADCCSMFGFRSRNGIPE---- 108

  Fly   458 CLVSKLFDVCPRSTVEE--MEQQDEVRVAWGTGIAGHVAESGEPVNIPDAYQDERFNCEIDSLTG 520
             |.::||:|...|..|:  :..:.|:......||.|.||.:.:..|:||..::..|:...|..||
 Frog   109 -LATRLFNVTKSSKFEDNLVAPESEIVFPLDIGIVGWVAHTKKSFNVPDVKKNTHFSDFADKQTG 172

  Fly   521 YRTKALLCMPIKDSSGDVIGVAQVINKMNGECFSEIDEKVFSSYLQFCGIGLRNAQLYEKSQLEI 585
            |.||.||..||.... :|:.|...:||.|...||:.||:||..||.|..:.|:...:.....:|.
 Frog   173 YTTKNLLAAPILQGK-EVLAVMMAVNKQNAAEFSKEDEEVFHKYLNFISVVLKYNHINYLHNIET 236

  Fly   586 KRNQVLLDLARMIFEEQSTIEHMVFRILTHMQSLIQCQRVQILLVHEAD---------------- 634
            :::||||..|..:|||.:.||....:.|..::..:.|:|..:.|:....                
 Frog   237 RKSQVLLWTANKVFEELTDIERQFHKALYTVRVYLNCERYSVGLLDMTKEKEFYEEWPIKLGEVP 301

  Fly   635 --KGS---------FSRVFDFEANDLSEEEATSRTSPYESRFPINIGITGHVATTGETVNVPNAY 688
              ||.         |.::.|:..:  .:||.....:|.|..:.:..|:..:||..|...|:.||.
 Frog   302 PYKGPKTPDGREVIFYKIIDYILH--GKEEIKVIPTPPEDHWSLVSGLPTYVAENGFICNMMNAP 364

  Fly   689 EDDRF---DASVDENSCFKHRSILCMAIKNSLGQIIGVIQLINKFNELDFTKNDENFVEAFAIFC 750
            .|:.|   ..:|||.. :..:::|.:.|.|...:|:||....|:.:...|.:.||...||.....
 Frog   365 ADEFFKFQKEAVDETG-WTIKNVLSLPIVNKKEEIVGVATFYNRKDAKPFDEYDEQITEALTQIL 428

  Fly   751 GMGIHNTHMYEKAIVAMAKQSVTLEVLSYHASAT--------------------MDEAHRLRRLR 795
            |..:.||..|:|......::.:..|:|.|....|                    .:|...|:.|:
 Frog   429 GWSVLNTDTYDKMNKLENRKDIAQEMLMYQLKCTPKELQSILKTKEKLNKEVEECEETELLKILK 493

  Fly   796 --VPSAVHFRLHDFKFDDIHFEDDDTLKACLRMFLDLDFVERFHIDYEVLCRWLLSVKKNYRNVT 858
              :|..:...|::|.|.|:...:.|.:|:.:|:|.:::.|::|.:..|||.:|:.:|:|.||::|
 Frog   494 EELPDPITAELYEFHFSDLPVSEHDLIKSGIRLFFEINAVDKFKVPVEVLTKWMYTVRKGYRDIT 558

  Fly   859 YHNWRHAFNVAQMMFAILTTTQWWKIFGEIECLALIIGCLCHDLDHRGTNNSFQIKASSPLAQLY 923
            ||||||.|||.|.||.:|.|.:..|.:.::|..|::....|||:|||||||.:|:|:.:|||:|:
 Frog   559 YHNWRHGFNVGQTMFTLLMTGKLKKYYSDLEAFAMVAAAFCHDIDHRGTNNLYQMKSQAPLAKLH 623

  Fly   924 STSTMEHHHFDQCLMILNSPGNQILANLSSDDYCRVIRVLEDAILSTDLAVYFKKRGPF------ 982
            .:|.:|.||.:....:|......|...|:...:..||.:.|.||::||||:|||||..|      
 Frog   624 GSSILERHHLEFSKTLLQDESINIFQTLNKRQFENVIHLFEVAIIATDLALYFKKRTMFQKIVDT 688

  Fly   983 ---LESVSQPTSYWVAE-EPRALLRAMSMTVCDLSAITKPWEIEKRVADLVSSEFFEQGDMEKQE 1043
               ::|..:...|.:.: ..:.::.||.||.|||||||||||::.:||.:|::||:||||:|:..
 Frog   689 TEQMQSEDERIKYIICDPTKKEIIMAMMMTGCDLSAITKPWEVQSKVALMVANEFWEQGDLERTV 753

  Fly  1044 LNITPIDIMNREKEDELPMMQVNFIDSICLPIYEAFATLSDKLEPLVEGVRDNRGHWIDLADVV- 1107
            |...||.:|:|.|.||||.:||.|||.:|..:|:.|:....::.|:.:|:::||..|...|||. 
 Frog   754 LQQQPIPMMDRNKSDELPKLQVGFIDFVCTFVYKEFSRFHKEILPMYDGLQNNRVQWKSQADVYE 818

  Fly  1108 -KTKTSQDQEPEEEQQQQNVISNGD 1131
             |.|...:|:.:||....|....|:
 Frog   819 EKMKILDEQKKKEEPNGGNPGQGGE 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde11NP_001286044.1 GAF 420..582 CDD:214500 53/163 (33%)
GAF 611..762 CDD:214500 40/180 (22%)
PDEase_I 859..1094 CDD:278654 102/244 (42%)
pde6cXP_002937230.1 GAF 74..223 CDD:214500 52/154 (34%)
GAF 255..442 CDD:214500 43/189 (23%)
PDEase_I 559..804 CDD:365964 102/244 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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