DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kon and cspg4

DIOPT Version :10

Sequence 1:NP_609881.3 Gene:kon / 35104 FlyBaseID:FBgn0032683 Length:2381 Species:Drosophila melanogaster
Sequence 2:XP_031754994.1 Gene:cspg4 / 116409763 XenbaseID:XB-GENE-990170 Length:2415 Species:Xenopus tropicalis


Alignment Length:2339 Identity:567/2339 - (24%)
Similarity:986/2339 - (42%) Gaps:371/2339 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 QEA--KMSTN--IRVKFRTRQENAFLFLAAGRTDYCLLRLESGLISFSYKIERDVVQLRSPKKQK 103
            :||  |.:||  :::||.|.|.:..||||.|.|.|.::.|.:|.:...........:|::|....
 Frog    28 EEAFFKETTNSSLQLKFITNQSSGLLFLATGGTQYLMVDLINGTLRTRLDRGSGESELKTPTWLT 92

  Fly   104 LNDLEWHDVAVQRFENNITLQVDGYIMRKQLPGDLAALNIHFGTFLGGVGDFTAEFL-DDVIGFR 167
            |.:|:.|.:.:...|:||||.:|.:.....||.....:|:..|.:|||.|.....|: .|:|.||
 Frog    93 LTNLKPHKMNLVIAESNITLTLDNFTTSSDLPRTPKQMNMKDGIYLGGTGTSDIPFIPGDIIRFR 157

  Fly   168 GCISDVFYNNINIIKRAKDRTSHTTSTGVAWTCSTEFEG-----------SIQDSISFMRNDSYS 221
            |||.:..::|:::..              .:....:|.|           |.:.|..|:...||.
 Frog   158 GCIWEAKFDNLDLFS--------------YYDPIVQFHGQWDYCHLGVAESSEGSFGFLGPRSYL 208

  Fly   222 LMMKESYAMGETLSLQFRT-MASAGVIFFNGG--YDFILLEIEDQHLKVTFNKAGSLVQFMTNEH 283
            :......:...|:.|...| .|....:.:..|  ..:..:||....||...:...|.|......:
 Frog   209 MFPSWDLSRHGTMHLILETSRAGRAPLLYQSGPQKSYFYVEISGGQLKGILDTGESAVTIENPVY 273

  Fly   284 ISDGKWHRVFLRYNAAIAELSLDDATSGYRGTHANETKASI-------NLEKSVFFGGVQEEMRR 341
            |||.:.|.:.:..:.|...|.:|...|          |.|:       :...:::.|||......
 Frog   274 ISDNRPHSINISVDRAEIWLGVDRTFS----------KVSVDSLGHVWDFNSNMYLGGVDASALA 328

  Fly   342 RLISKGLR---INEI---SFKGCMRDILVNDLPLGFAEMTISRSLALNCLWKYPCVEYNPCLKSG 400
            :|....||   ::::   ||.||::|:.||.:.|.|.::.....:|..|                
 Frog   329 KLRDGPLREFYLDDLEYRSFTGCLKDLTVNSIKLSFHDVLKFSDVATGC---------------- 377

  Fly   401 ICSQHGVDGFICYCD------QSYCIKADFQGPFKIFTETSP------------ELE-------- 439
                 ..|.:|.|.:      |.| :.....|.    |.|:|            .||        
 Frog   378 -----QEDEYIDYAEYDETSTQRY-MSTTIPGN----TPTAPLSSIISSLYENCNLESSFPNMTK 432

  Fly   440 LLYVSPMQLLEGGTAFLSPHFIDIILDLRRYPSLNEQSIIFHVVHQPKYGQLLQYSAEKAIFVP- 503
            ||...|:.:..||:..|:...|...:|..:. .:.:..::|..|...::|.|: |.      :| 
 Frog   433 LLSPQPLTVTRGGSVVLALEKIRPTVDFGKV-GIRQSQVVFREVGSAQHGHLI-YD------IPG 489

  Fly   504 ---CRTFNLVDLATDKLKYVHNGQENFNDHATLDMQIFGDVHKIPENILGKHRFLLHANITPIND 565
               .|||.|:|:...|::|||:|.|:..|  ||..::........:.:..|.|:::..:::|.:.
 Frog   490 AEVRRTFTLLDVTNHKVQYVHDGSESNED--TLKFEVDISSRTTTDCLRKKQRYIMPISVSPESS 552

  Fly   566 PPQLRLHSHKILRVIEGIERVLDVDLFNIDDPDSEPGNLIYTILPTQSPQETFGCFIVG------ 624
            .|.|.....|..|::...::.:..::..|:|.|:....|  ||:.:       |.:|.|      
 Frog   553 APILIFPKGKTFRILSHGQKPITTEIIQIEDYDTPCDEL--TIMVS-------GGYIEGHIERQN 608

  Fly   625 --GATTSAFSQAEVNVGKVSYLYNSTTAESFSYELQLQVSDGIETSETVYLPV----------SV 677
              |.....||..::..|:|::::.|..    ..||.||.|||...|:...:.:          .|
 Frog   609 NPGEVVHEFSCRDIENGQVAFIHKSGN----QLELILQASDGSLKSKPAIISLLVTEPNLQKAQV 669

  Fly   678 HPLELRLVNNTGLIMIHKSSLPISTANLSIGTNAVDDHIDIRYDIVKAPQHGVLQRLRQIDGSWV 742
            .|||   |:....|:|..||||      |: |||....:::.|.|...|:.|.:|:| .:...|.
 Frog   670 SPLE---VSQGASILIPPSSLP------SV-TNADTIALEVFYRISDNPKFGEVQKL-MVGDEWK 723

  Fly   743 NVDWFSDSQLLLGHIRYLHS-SDFPWQD-----EFKFIASFGFVTTQTFDFRITFTRLRITSTRP 801
            ..:.|:.:.|....:||... .|.|..:     ..:.......::.:|...::......:....|
 Frog   724 VTEVFTQNDLEKRAVRYFSKVLDIPMGELNENLSIQMYLGTELLSNETLQIKVKKPYFHLKKMIP 788

  Fly   802 SQISINGSREILLTSDVLSYETTPIGSFARSVIYKITKPTRYGGIYVEGSRKAAKKLDSFTQQDI 866
              :.:...||:.:|...:..:... .....|:.|.|.:..:.|.:::.|.|..  :...|.|.||
 Frog   789 --LKLGRKREVKITGKEIQMDIRE-QRLKESLTYFIIQSPKKGNLHINGQRLI--EGSQFRQDDI 848

  Fly   867 EKRRIRYQTHHTSYSSFSDHLEF-VVSVAECDDV------AGVLEINYRPPDELINKLGYQNHEP 924
            :|:::.|.....:.....|..:| |::.|:...|      .||      .||     ..|..:..
 Frog   849 QKQQLSYAATVRNTRDTEDQFQFQVITGAQISPVYTYKIQIGV------DPD-----APYFTNRA 902

  Fly   925 LQVQEGERALITKNHFGIRFNIYESLQFQVSLSPEHGVICKY-------DEQTGLTTPVEMFTLE 982
            |.|.||....||..:..:......|..::|...|:|||:.:.       .|:||:|.    ||.:
 Frog   903 LHVLEGGEEAITPENLFLTSGNSASFFYEVIDGPQHGVLVRKGSSRLSDPEETGVTE----FTND 963

  Fly   983 QLFRNDIYYCHDDTESTRDTFELLI----------LSGDETDLQFVSNM-----EVHIKLVNDNE 1032
            .:....::|.||.:|:|.|....:.          .||:|.:..|...:     .|.|:.||||.
 Frog   964 DILLGQLFYQHDGSETTEDDIPFVASMLRVESGTDSSGEEEEETFEEEVVRGVFRVSIQPVNDNP 1028

  Fly  1033 PYRTAIERVFHVVRNGIRTLNPTVLQYLDADVNTNHTDIHYIHVSSTNGAFYKSGHYIDS----- 1092
            |::| :.:.|||||:|.|.|....:.:.|.|  :..||...:.|  .:|..:....::|.     
 Frog  1029 PFQT-VHKTFHVVRDGQRLLTTNDIAFSDPD--SGSTDAQIVLV--RHGVPFGKIVFVDDPSLLV 1088

  Fly  1093 --FTQDDIANRRIMFQHTGADSGTASFIVTDREHEVNGLLEIRASDPFVSMMATNASIVQEGKFV 1155
              |||:|:...||::.|:|.|.|:....|:|..|::..:||::||:||:.:.......|..|:.|
 Frog  1089 FRFTQEDLRRHRILYVHSGPDQGSIQLQVSDGLHQLTTILEVQASEPFMRIPNITMLNVSLGEQV 1153

  Fly  1156 VLKNKDFILETNLDMKLD-EIYYEVIKPPSYGILMYLSRANEGENGTTIYKATNYTSLSNFTHLD 1219
            .||.....||||||::.: :|.|.:...|..|:::     .||       |..|     :||..:
 Frog  1154 TLKTIGLQLETNLDIRRENDIRYYIEPQPRRGVIL-----KEG-------KPAN-----SFTQHE 1201

  Fly  1220 IERERLVY-WNTEIASMDKVRYRVHIKNITAEGEVMFRIYPSAYWEPLQVKQNHTLYVEESTSVL 1283
            :...:::| .|.|..:.|:....|....:...|::...:..    |.|.|..|..:||.:.....
 Frog  1202 LVEGKIIYHHNGERNNKDRFGISVDANQVVTAGDIEIHVVT----EMLHVIHNGKVYVFQGERAE 1262

  Fly  1284 ISRDVLEVVHPNISPGDITFLVTSSPMHGYL-----EMQSMSFDDEYNCKVFDQSSVNTEKMFYI 1343
            |.::.|.:......|..|.:.:|..|..|||     |:.|.........:.|.|..:|..|:.|:
 Frog  1263 IKKEDLMISAVGKFPEMIVYTLTDPPSFGYLVAVGSELSSDGSPSLDTVETFTQEDINQGKILYL 1327

  Fly  1344 QAGVNQSTDYFVFDVTNGITWLRQLMIKIVIIPEKLYMHSNIISVVEGKTVQLNPTDIQPYSEYY 1408
            .:..:...|....|||.|....:::::.:.::|..:.:.::.:.|.||....::.:.:|..|:|:
 Frog  1328 HSAPDLLPDSLTLDVTTGEGVPQEVVVLVEVLPTSIPLIASELEVEEGGKAAISNSTLQISSKYF 1392

  Fly  1409 RGKILEYIVTITPSSGHVL-AGNSKVKRFTQKQLEQGSIQYVHNGSENATDSITLVAMAR--NKE 1470
            ....||:.|.|.||.||:: |....::.|...::.||.:.|.|:|||..:|:.|:|.:|.  |::
 Frog  1393 MNLDLEFTVLIAPSRGHIVNAEKINLRSFNWNEVNQGQVFYEHDGSETLSDNFTIVVVASDINRQ 1457

  Fly  1471 SVPFELEFAVVQVNDEEPMMVTNTGLQVWNGGRYVIKNTDLLAQDYDTPPENLTFVVNHIYGGYL 1535
            |.|..:...|..||||:|.:|||||:|:..|...|:.:..|.:.|.|:.|:.|.:.|.....|.|
 Frog  1458 SQPTTISVTVQAVNDEKPQVVTNTGMQILEGTTAVLSSQALYSTDADSSPDELIYSVLPPSNGQL 1522

  Fly  1536 ARKSAPHQKIEHFTQAQINLEEIYFMHDSNSRRNELSFVVTDGLFNTTTQMLNIEIKPIEILAEH 1600
            ..:.:. :.|..|||.|:...::.|||..| ......|.|:||:..:.....:|::.|:.|..|.
 Frog  1523 IFRGST-EGIVSFTQKQLKEGDVQFMHKGN-LDGGFYFNVSDGINQSDESFFHIQVTPLAITMET 1585

  Fly  1601 NENLHVFPLTKKQILRDYLHFKCSDEEREIR----YNITVPPSLGRIVNEFIDNGFTKEVSEFTQ 1661
            .::|.|.|.:.:.|...||. ..|:|.:::.    |:|..||.||.||.:  .:.....:..|||
 Frog  1586 IQDLTVCPKSLQPITSQYLQ-AVSNEPKDLMSDLLYHIDEPPQLGDIVRQ--QDSEVTWLMNFTQ 1647

  Fly  1662 NDVDNGHIFYEHTAVIMEF-RTNDSFYFDVVAERSDRLLNQKFNIEISVSSGG-----LLRFLPV 1720
            ::||.|.|:|:|.|:...| ..:||..|.|.   |.::::.::.:.::||..|     ..||...
 Frog  1648 SEVDAGFIYYKHRAMDTPFWIAHDSILFHVT---SGQVVSTRYLMNVTVSFQGPCPQLHTRFWKN 1709

  Fly  1721 NKLNVDEGGSVPI---KLDFSKILEYLKTKAGINNPE------LFIEAIQKPTHGNIGLGHE--F 1774
            ..:.|.||.|.||   .||.|.:|        .||..      .|:..:  |:.|.:.:...  .
 Frog  1710 TGITVMEGSSSPITSSHLDASNLL--------ANNSSDSQDVVYFLTTL--PSWGYLAIDDVPLE 1764

  Fly  1775 KHMQRYHPSDFFTKKVYYIHDHSDTLEDTILMSVY-LTQGNIF------LCNLTIPVSIN----- 1827
            :|...:..|.....|:.|.|.....|||:..:..: |.:.:.|      :.:|.|..|.|     
 Frog  1765 QHSPYFVQSQLEKGKLQYTHTGPGILEDSFHLKAWQLPRSHSFSEPPQEVGSLVISESFNVTVIG 1829

  Fly  1828 ----PINDQPFHLVTHLPQMTVVEGENRTITRNDLLTEDADTPPEEIIYDVMSGPTLGVLRKITN 1888
                |:...|..|     |:.|..|....|||:.|..:....|||:||:..:..|. |:      
 Frog  1830 VPKLPLQVSPPKL-----QLQVAPGSYAVITRDHLSIDVPLIPPEKIIFTALEMPE-GI------ 1882

  Fly  1889 DGRPEDLLAFSNQ------FTQADINNDRIIYVHFGMPQSTTFCFTVSDGQSNPAYEIFTIKIDS 1947
                 .|...|||      |||.|:|...:|.:......|.:..|.::....:|...:..:|:..
 Frog  1883 -----SLATQSNQYIDVLSFTQEDVNMRTLIILANRTAASGSIQFNITTRNQSPLVALLPVKVSP 1942

  Fly  1948 IHLQPSAMQAPVKVQQGATTAPMRLDHIGVSTNVHMERLSYNVTNSPLFGIIVYKHQPTLRFTQQ 2012
            :|      :|.::|.|.:..||:...|:..|.....:.:.:.:|..|.||.::.|..|...|...
 Frog  1943 LH------KAILEVPQASAMAPLTTKHVTPSKEKIPQDMLFKITKQPNFGQLIAKKMPVREFRWA 2001

  Fly  2013 QLETSQISYMQTDLNRSNDSFQVSAYVPGTNYVAQVDVVMEVEPVIQINDIVMKEAESSGGKIKL 2077
            |::..::||:.|....|.|.|:..|....|..:|....|..:..|    .||.:|....|..:.|
 Frog  2002 QVKNGEVSYVFTSFLSSQDEFEYLALSNRTEEMAGTVTVAAIATV----KIVDREQWPRGCTVML 2062

  Fly  2078 ITSLDNDNPLSLKLNKFNPKFVITRMPSTGQIRKIIRSTGLTTDGQSDRSTNIFSYKELRSGVVY 2142
            ..:..:.:.|..: .:.:|:|.:.|.|...::.|..:..|   :|:|. |.:.|:.:|:..|:: 
 Frog  2063 GPNTVDASELGTR-TESDPEFRVLRQPRGARLVKYPKEQG---EGESS-SIDYFTQREIERGLI- 2121

  Fly  2143 FVPHESVEETEADH-------DSFDYQLLIKTVQPAQATV---SIEYRSRVEETETVHLGSAGL 2196
                 .||..|..|       |....::..|.|.||..||   :|.|.:......|:...|.|:
 Frog  2122 -----GVEIWEDGHNDMTLRNDKIQLEVAAKNVPPANVTVKFTTIPYNASQPYRVTILRKSVGM 2180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
konNP_609881.3 LamG 30..176 CDD:238058 45/137 (33%)
LamG 211..365 CDD:238058 36/169 (21%)
Cadherin_3 <445..535 CDD:465048 26/93 (28%)
Cadherin_3 552..664 CDD:465048 26/119 (22%)
Cadherin_3 667..773 CDD:465048 29/121 (24%)
Cadherin_3 781..892 CDD:465048 20/111 (18%)
Cadherin_3 921..1005 CDD:465048 24/90 (27%)
Cadherin_3 1025..1121 CDD:465048 33/102 (32%)
Cadherin_3 <1149..1230 CDD:465048 22/82 (27%)
Cadherin_3 1264..1361 CDD:465048 26/101 (26%)
Cadherin_3 1369..1464 CDD:465048 26/95 (27%)
Cadherin_3 1470..1578 CDD:465048 35/107 (33%)
Cadherin_3 1821..1932 CDD:465048 32/125 (26%)
cspg4XP_031754994.1 LamG 34..166 CDD:238058 42/131 (32%)
LamG 198..358 CDD:238058 36/169 (21%)
Cadherin_3 <468..524 CDD:465048 20/64 (31%)
Cadherin_3 539..646 CDD:465048 26/119 (22%)
Cadherin_3 <671..740 CDD:465048 23/79 (29%)
Cadherin_3 880..989 CDD:465048 30/123 (24%)
Cadherin_3 1013..1120 CDD:465048 34/111 (31%)
Cadherin_3 1246..1345 CDD:465048 24/98 (24%)
Cadherin_3 <1370..1449 CDD:465048 25/78 (32%)
Cadherin_3 1457..1563 CDD:465048 35/107 (33%)
Cadherin_3 <1709..1799 CDD:465048 23/99 (23%)
Cadherin_3 1819..1925 CDD:465048 32/122 (26%)

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