Protein Alignment bsf and RPF2

DIOPT Version :10

• Sequence 1: NP_523596.2
• Gene: bsf / 35100
• FlyBaseID: FBgn0284256
• Length: 1412
• Species: Drosophila melanogaster
• Sequence 2: NP_176454.1
• Gene: RPF2 / 842564
• AraportID: AT1G62670
• Length: 630
• Species: Arabidopsis thaliana
• Alignment Length: 576
• Identity: 115/576 - (19%)
• Similarity: 215/576 - (37%)
• Gaps: 124/576 - (21%)

  Fly     3 SILRTGKLLRYFAGFTRNVLVNSVRE----------NETSNLLNNAPCMCGQFQNGFATNAAAK- 56
            ||:...|||...|...:..:|.|:.|          :.|.::|.|  |.|.:.|...|.....|
plant    80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN--CFCRRSQLPLALAVLGKM 142

  Fly    57 AELSLDKQI-------------RRLDQDVRRIGRI-------SRRDLEEVLDEIRSHRTATSSQS 101
            .:|..:..|             :|:.:.|..:.::       :......::..:..|..|:.:.:
plant   143 MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 207

  Fly   102 L---LVIRCCGNLVPEELPEVRT--ALVQEIWK------TLNALN------VPMDISHYNALLRV 149
            |   :|.:.|       .|::.|  .:|..:.|      ..|.||      :...:..||.::..
plant   208 LIDRMVAKGC-------QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265

  Fly   150 YLENEHGFAPTDFLAEIEAKGIEPNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFN 214
            ..:.:|.....:...|:|.|||.||.|||..||:..|..|....|:|:|..|..:.:..:...|:
plant   266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

  Fly   215 SLILGHSQANDLESAKGILGVMMQAGLEPSADTYTTLLCAFARHGDLAAVKETLAECEQKEIILL 279
            :||....:...|..|:.:...|::..::||..||::|:..|..|       :.|.|.:|....::
plant   331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH-------DRLDEAKQMFEFMV 388

  Fly   280 DKDLLDIVYTLTVNGNGEHVDDVLTKLRLSPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSR 344
            .|...               .||:|...|..||.:          .|..|: |:::.|.|.:...
plant   389 SKHCF---------------PDVVTYNTLIKGFCK----------YKRVEE-GMEVFREMSQRGL 427

  Fly   345 VNGEPVDVGAFFIRQMVKANRPVEKILSICKSLQSEGLNPKALTIAT--EAGLTNGVINNALPLL 407
            | |..|... ..|:.:.:|. ..:....|.|.:.|:|:.|..:|..|  :....||.:..|:.:.
plant   428 V-GNTVTYN-ILIQGLFQAG-DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489

  Fly   408 QEMKNAGLPIRQHYF----------------WPLICSAESNQVLEIVRRMQQEFSVF--PNSETV 454
            :.::.:.:....:.:                |.|.|:.....|...|.......|.|  ..|:..
plant   490 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554

  Fly   455 RDYVIPNLKEKNWERIVTSLRDAGVPNSTAVTSAVYSALVTHQIAEAAKIMEKNRA 510
            .|.:...:||           |..:|||....:.:.:.|.......:|:::::.|:
plant   555 ADALFKEMKE-----------DGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsf	NP_523596.2	PPR repeat	142..169	CDD:276811	5/26 (19%)
		PLN03218	<163..>261	CDD:215636	31/97 (32%)
		PPR repeat	177..204	CDD:276811	10/26 (38%)
		PPR repeat	210..239	CDD:276811	6/28 (21%)
		PPR_2	213..257	CDD:463778	12/43 (28%)
		PPR repeat	245..274	CDD:276811	7/28 (25%)
		Pterin_binding	<456..>543	CDD:444759	10/55 (18%)
		LapB	<661..855	CDD:442196
		PPR repeat	681..704	CDD:276811
		PPR repeat	710..739	CDD:276811
		PPR repeat	780..818	CDD:276811
		PPR repeat	825..854	CDD:276811
RPF2	NP_176454.1	PLN03077	<13..>385	CDD:215561	70/320 (22%)
		PPR repeat	84..110	CDD:276811	7/25 (28%)
		PPR repeat	118..145	CDD:276811	8/28 (29%)
		PPR repeat	153..180	CDD:276811	2/26 (8%)
		PPR repeat	188..215	CDD:276811	4/26 (15%)
		PLN03218	<219..>591	CDD:215636	87/418 (21%)
		PPR repeat	223..250	CDD:276811	6/26 (23%)
		PPR repeat	258..285	CDD:276811	5/26 (19%)
		PPR repeat	291..320	CDD:276811	11/28 (39%)
		PPR repeat	326..355	CDD:276811	6/28 (21%)
		PPR repeat	363..390	CDD:276811	8/33 (24%)
		PPR repeat	398..425	CDD:276811	9/37 (24%)
		PPR repeat	431..460	CDD:276811	5/30 (17%)
		PPR repeat	466..495	CDD:276811	5/28 (18%)
		PPR repeat	501..530	CDD:276811	3/28 (11%)
		PPR repeat	536..565	CDD:276811	7/39 (18%)
		PPR repeat	571..599	CDD:276811	3/27 (11%)