DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsf and FAC19

DIOPT Version :10

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_172835.1 Gene:FAC19 / 837941 AraportID:AT1G13800 Length:883 Species:Arabidopsis thaliana


Alignment Length:993 Identity:203/993 - (20%)
Similarity:365/993 - (36%) Gaps:274/993 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 VPMDISHYNALLRVYLENEHGFAPTDFLAEI-----EAKGIEPNRVTYQRLIARYCQQGDIEGAT 195
            :|: :||...|:|....:.....|.  ||..     .::.::.....|:.|     :..|| |..
plant     6 IPL-LSHVRGLIRQGPSSRFYVVPA--LARTNLTISHSEQVKEGTFDYKAL-----ELNDI-GVL 61

  Fly   196 RILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMMQAGLEPSADTYTTLLCAFARHGD 260
            |:|..|  |..|.....|...|.|:.....:::...::.::...||:...||:   |....|.||
plant    62 RVLNSM--KDDPYLALSFLKRIEGNVTLPSVQAYATVIRIVCGWGLDKKLDTF---LFELVRRGD 121

  Fly   261 ------LAAVKETLAECEQKEIILLDKDLLDIVYTLTVN--GNGEHVD---DVLTKLRLSPGFNQ 314
                  :..:.:.:.|.||..::|:.      |.|..|.  .|.:..|   |:..:...|.|...
plant   122 EGRGFSVMDLLKAIGEMEQSLVLLIR------VSTALVKAYANLDMFDEAIDIFFRAYYSLGRAP 180

  Fly   315 D--AVN-VILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDVGAFFIRQMVKA------NRPVEKI 370
            |  |:| :|.|::..|..|:.:.....:.|..      :|..|.....:|:|      ...:||:
plant   181 DIKALNFLISRMIASGRSDMVVGFFWEIERLG------LDADAHTYVLVVQALWRNDDKEELEKL 239

  Fly   371 LSICKSLQSEGLNPKALTIATEAGL-TNGVINNALPLLQEMKNAGLPIRQHYFWPLICSAESNQV 434
            ||  :.|.||..||....:....|| .|.:.:.|..|||.:::|.:.:.:        |......
plant   240 LS--RLLISETRNPCVFYLNFIEGLCLNQMTDIAYFLLQPLRDANILVDK--------SDLGIAY 294

  Fly   435 LEIVRRMQQEFSVFPNSETVRDYVIPNLKEKNWERIVTSLRDAGVPNSTAVTSAVYSALVT-HQ- 497
            .::||.:..|..:                 ::.|.:|..:...|:....    .||||::. |: 
plant   295 RKVVRGLCYEMRI-----------------EDAESVVLDMEKHGIDPDV----YVYSAIIEGHRK 338

  Fly   498 ---IAEAAKIMEKNRAYYVPFLFKQPLILALSHTNDYASFIRCVRQIHEGLQFRQGKD--EEVEQ 557
               |.:|..:..|       .|.|:..|..:.    .:|.::|..|:.   .|.:..|  :|..:
plant   339 NMNIPKAVDVFNK-------MLKKRKRINCVI----VSSILQCYCQMG---NFSEAYDLFKEFRE 389

  Fly   558 VEGVAAVPTER----ITPDVVGAI--VQEATTYFRRDRGATL-------EKILKGLVKQGLSISS 609
            ..    :..:|    :..|.:|.:  |:||...||...|..:       ..::.|...||.  .|
plant   390 TN----ISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGK--CS 448

  Fly   610 DKATQLSEQLGSELTPKI---SELLGKLSSGELEPVP------LPNSGKRS------------LD 653
            |....:.|..|:..||.|   :.|.|.|::..|....      :.|.|.:.            :|
plant   449 DAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLID 513

  Fly   654 SLSINELERFIVNVEGKG-EN-ANNIKRQLLNACFRSQNLEKTLQVIEKLEAEKFQIPVGIYAQL 716
            :..:::.|.|..::|.|. || |:.:|......|     |:...:...:||   |.:|..:|..|
plant   514 AGELDKAEAFYESLEHKSRENDASMVKGFCAAGC-----LDHAFERFIRLE---FPLPKSVYFTL 570

  Fly   717 IDLNTHHK----KSSEALE------------IYGKLKAKDATFQLDNLKAVRLADLLLQEERVDA 765
            .......|    |:.:.|:            :||||..  |..:::|::..|            .
plant   571 FTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIG--AWCRVNNVRKAR------------E 621

  Fly   766 AFKILEENKKEVPVAEAEGSYNYMSTVWRILNSLAEAGQPERLRKLFDVLVGANY---IVPTNVL 827
            .|:|| ..||.||         .:.|...::|:.....:|::...||:.:...:.   :|..:||
plant   622 FFEIL-VTKKIVP---------DLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVL 676

  Fly   828 LG--PLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTDLSTGIHGE 890
            |.  |.:       |:.:.:|||:.|......|...|.. |.|                    .:
plant   677 LNSDPEL-------DMKREMEAFDVIPDVVYYTIMINRY-CHL--------------------ND 713

  Fly   891 VNSLYDLVFSFVECGRVRQARKILE-----TPGLRTRPQRINSACDRYKNEGLLQPLEGLIEATK 950
            :..:|.|   |.:..|    |:|:.     |..|:.:|:|           .|.:.::..     
plant   714 LKKVYAL---FKDMKR----REIVPDVVTYTVLLKNKPER-----------NLSREMKAF----- 755

  Fly   951 DLGHIDRNKIYYTLLLSYD-KADEAEKALGLWTKMQEENVTPNDA------------FLLKLAEI 1002
               .:..:..|||:|:.:. |..:..:|..::.:|.|..|.|:.|            ..||.|::
plant   756 ---DVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKM 817

  Fly  1003 LSKKNID---VPFVVPET 1017
            :..:.|:   .|.|||.|
plant   818 IFDRMIESGVKPDVVPYT 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR repeat 142..169 CDD:276811 6/31 (19%)
PLN03218 <163..>261 CDD:215636 23/108 (21%)
PPR repeat 177..204 CDD:276811 8/26 (31%)
PPR repeat 210..239 CDD:276811 3/28 (11%)
PPR_2 213..257 CDD:463778 8/43 (19%)
PPR repeat 245..274 CDD:276811 8/34 (24%)
Pterin_binding <456..>543 CDD:444759 17/91 (19%)
LapB <661..855 CDD:442196 48/216 (22%)
PPR repeat 681..704 CDD:276811 4/22 (18%)
PPR repeat 710..739 CDD:276811 9/44 (20%)
PPR repeat 780..818 CDD:276811 5/37 (14%)
PPR repeat 825..854 CDD:276811 9/30 (30%)
FAC19NP_172835.1 PPR repeat 150..176 CDD:276811 5/25 (20%)
PPR repeat 182..211 CDD:276811 6/28 (21%)
PPR repeat 217..244 CDD:276811 7/28 (25%)
PPR repeat 254..281 CDD:276811 7/26 (27%)
PPR_2 292..338 CDD:463778 11/66 (17%)
PPR repeat 293..320 CDD:276811 5/43 (12%)
PPR repeat 328..355 CDD:276811 9/33 (27%)
PLN03218 <330..872 CDD:215636 124/612 (20%)
PPR repeat 363..390 CDD:276811 6/33 (18%)
PPR repeat 396..425 CDD:276811 8/28 (29%)
PPR repeat 431..457 CDD:276811 5/27 (19%)
PPR repeat 466..495 CDD:276811 5/28 (18%)
PPR repeat 501..530 CDD:276811 4/28 (14%)
PPR repeat 566..594 CDD:276811 5/27 (19%)
PPR repeat 602..629 CDD:276811 10/41 (24%)
PPR repeat 637..664 CDD:276811 5/26 (19%)
PPR repeat 700..727 CDD:276811 8/54 (15%)
PPR repeat 763..790 CDD:276811 7/26 (27%)
PPR repeat 796..825 CDD:276811 5/28 (18%)
PPR repeat 831..860 CDD:276811 4/5 (80%)

Return to query results.
Submit another query.