DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsf and AT5G42310

DIOPT Version :10

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_199046.1 Gene:AT5G42310 / 834236 AraportID:AT5G42310 Length:709 Species:Arabidopsis thaliana


Alignment Length:511 Identity:108/511 - (21%)
Similarity:186/511 - (36%) Gaps:140/511 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RTGKLLRYF--------AGFTRNVLVNS-VRENETSNLLNNAPCMCGQFQNGFATN--------- 52
            |:.||...|        ...|.|.|:.: .|.|:....||   .:....|:|:.::         
plant   179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALN---LIAKMRQDGYQSDFVNYSLVIQ 240

  Fly    53 ---AAAKAE----LSLDKQIRR--LDQDVRRI-----GRISRRDLEEVLDEI-RSHRTATSSQSL 102
               .:.|.:    |.|.|:|.|  |:.||:.:     |.....|..:.|..: .:..|..|:::.
plant   241 SLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTA 305

  Fly   103 LVIRCCGNLVPEELPEVRTALVQEIWKTLNALNVPMDISHYNALLRVYLENEHGFAPTDFLAEIE 167
            .::    :::.......||...:.:::.|....:......|||||:.|::..........::|:|
plant   306 TLV----SIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEME 366

  Fly   168 AKGIEPNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSLILG------------- 219
            .:|:.|:..||..||..|...|..|.|..:|:.|.|..:..|..||:.|:.|             
plant   367 KRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQV 431

  Fly   220 ----------------------HSQANDLESAKGILGVMMQAGLEPSADTYTTLLCAFARHGDLA 262
                                  ..:.|.|:.|......|:..|:||...|:.||:....:||...
plant   432 LKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHI 496

  Fly   263 AVKETLAECEQKEIILLDKDLLDIVYTLTVN--GNGEHVDD----------------VLTKLRL- 308
            ..:|.....|::..:     .....|.:.:|  |:.|..||                |:|...| 
plant   497 VAEEMFEAMERRGCL-----PCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLV 556

  Fly   309 -----SPGFNQDAVNVILRLVNKGHEDVGLKLLRVMPRSSRVNGEPVDVGAFFIRQMVKANRPVE 368
                 |..|| ||:..:..:     :.||||     |.|:..|..   :.|:..|.:      .|
plant   557 DVYGKSGRFN-DAIECLEEM-----KSVGLK-----PSSTMYNAL---INAYAQRGL------SE 601

  Fly   369 KILSICKSLQSEGLNPKALTIATEAGLTNGVIN---------NALPLLQEMKNAGL 415
            :.::..:.:.|:||.|..|.:       |.:||         .|..:||.||..|:
plant   602 QAVNAFRVMTSDGLKPSLLAL-------NSLINAFGEDRRDAEAFAVLQYMKENGV 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR repeat 142..169 CDD:276811 8/26 (31%)
PLN03218 <163..>261 CDD:215636 32/132 (24%)
PPR repeat 177..204 CDD:276811 10/26 (38%)
PPR repeat 210..239 CDD:276811 8/63 (13%)
PPR_2 213..257 CDD:463778 13/78 (17%)
PPR repeat 245..274 CDD:276811 7/28 (25%)
Pterin_binding <456..>543 CDD:444759
LapB <661..855 CDD:442196
PPR repeat 681..704 CDD:276811
PPR repeat 710..739 CDD:276811
PPR repeat 780..818 CDD:276811
PPR repeat 825..854 CDD:276811
AT5G42310NP_199046.1 PPR_2 199..242 CDD:463778 9/45 (20%)
PPR repeat 199..226 CDD:276811 7/29 (24%)
PPR repeat 232..263 CDD:276811 5/30 (17%)
PPR repeat 273..298 CDD:276811 3/24 (13%)
PPR repeat 306..333 CDD:276811 3/30 (10%)
PPR_2 309..351 CDD:463778 9/41 (22%)
PPR repeat 339..368 CDD:276811 8/28 (29%)
PPR_2 341..386 CDD:463778 15/44 (34%)
PLN03218 <365..>688 CDD:215636 71/318 (22%)
PPR repeat 374..401 CDD:276811 9/26 (35%)
PPR repeat 409..437 CDD:276811 4/27 (15%)
PPR repeat 447..473 CDD:276811 4/25 (16%)
PPR repeat 481..508 CDD:276811 7/26 (27%)
PPR repeat 514..543 CDD:276811 6/28 (21%)
PPR repeat 549..577 CDD:276811 8/33 (24%)
PPR repeat 584..613 CDD:276811 5/37 (14%)
PPR repeat 619..648 CDD:276811 9/35 (26%)
PPR repeat 654..683 CDD:276811
Blue background indicates that the domain is not in the aligned region.

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