DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsf and PGR3

DIOPT Version :10

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_194913.1 Gene:PGR3 / 829314 AraportID:AT4G31850 Length:1112 Species:Arabidopsis thaliana


Alignment Length:1003 Identity:201/1003 - (20%)
Similarity:334/1003 - (33%) Gaps:340/1003 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 IGRISRRDLEEVLDEIRSHRTATSSQSL----LVIRCCG-----NLVPEEL---------PEVRT 121
            :|...|||::.|:..::...|.....::    :.||..|     |...|.|         |:|.|
plant   231 VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT 295

  Fly   122 ALV--------------QEIWKTLNALNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIE 172
            ..|              :|:::.:.......|...|..||..:.:|....:...|.:|:|..|..
plant   296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV 360

  Fly   173 PNRVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMM 237
            |:.||:..|:...|:.|:...|...|:.||.:.:..|.:.:|:||.|..:.:.|:.|..:.|.|.
plant   361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425

  Fly   238 QAGLEPSADTYTTLLCAFARHGDLAAVKETLAECEQK----EIILLDKDLLDIVYTLTVNGNGEH 298
            ..|::|:|.||...:..:.:.||..:..||..:.:.|    .|:..:..|    |:|...|....
plant   426 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL----YSLAKAGRDRE 486

  Fly   299 VDDVLTKLRLSPGFNQDAV--NVILRLVNK-GHEDVGLKLLRVMPRSSRVNG-EP-VDVGAFFIR 358
            ...:...|: ..|...|:|  |::::..:| |..|..:|||..|..    || || |.|....|.
plant   487 AKQIFYGLK-DIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME----NGCEPDVIVVNSLIN 546

  Fly   359 QMVKANRPVEKILSICKSLQSEGLNPKALTIAT-EAGL-TNGVINNALPLLQEMKNAGLPIRQHY 421
            .:.||:| |::...:...::...|.|..:|..| .||| .||.|..|:.|.:.|...|.|     
plant   547 TLYKADR-VDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP----- 605

  Fly   422 FWPLICSAESNQVLEIVRRMQQEFSVFPNS---ETVRDYVIPNLKEKNWERIVTSLRDAG-VPNS 482
                                       ||:   .|:.|.:..|.:.....:::..:.|.| ||:.
plant   606 ---------------------------PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDV 643

  Fly   483 TAVTSAVYSALVTHQIAEAAKIME--KNRAY--YVPFLFKQPLILALSHTNDYASFI-----RCV 538
            ....:.::..:...|:.||.....  |...|  :|......|.::..|...|....|     .|.
plant   644 FTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708

  Fly   539 RQIHEGLQFRQGKDEEVEQVEGVAAVPTERITPDVVGAIVQEATTYFRRDRGATLEKILKGLVKQ 603
            .|                        |......|::|:|:.||                      
plant   709 DQ------------------------PANLFWEDLIGSILAEA---------------------- 727

  Fly   604 GLSISSDKATQLSEQLGSELTPKISELLGKLSSGELEPVPLPN--------SGKRSLDSLSINEL 660
            |:    |.|...||:|.:.         |....|:...||:..        ||.|:|       .
plant   728 GI----DNAVSFSERLVAN---------GICRDGDSILVPIIRYSCKHNNVSGARTL-------F 772

  Fly   661 ERFI--VNVEGKGENANNIKRQLLNACFRSQNLEKTLQVIEKLEAEKFQIPVGIYAQ------LI 717
            |:|.  :.|:.|....|                   |.:...|||:..:|...::.|      :.
plant   773 EKFTKDLGVQPKLPTYN-------------------LLIGGLLEADMIEIAQDVFLQVKSTGCIP 818

  Fly   718 DLNTHHKKSSEALEIYGKLKAKDATFQLDNLKAVRLADLLLQEERVDAAFKILEENKKEVPVAEA 782
            |:.|:    :..|:.|||....|..|:|                            .||:...|.
plant   819 DVATY----NFLLDAYGKSGKIDELFEL----------------------------YKEMSTHEC 851

  Fly   783 EGSYNYMSTVWR--ILNSLAEAGQPERLRKLFDVLVGANYIVPTNVLLGPLIKVHLVKDDIPKAI 845
            |.     :|:..  :::.|.:||..:....|:..|:......||....||||      |.:.|: 
plant   852 EA-----NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI------DGLSKS- 904

  Fly   846 EAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTDLSTGIHGEVNSLYDLVFSFVECGRVRQA 910
                                                                       ||:.:|
plant   905 -----------------------------------------------------------GRLYEA 910

  Fly   911 RKILETPGLRTRPQRINSACDRYKNEGLLQPLEGLIEATKDLGHIDRNKIYYTLLLSYDKADEAE 975
            :::.                     ||:|           |.|......||..|:..:.||.||:
plant   911 KQLF---------------------EGML-----------DYGCRPNCAIYNILINGFGKAGEAD 943

  Fly   976 KALGLWTKMQEENVTPNDAFLLKLAEIL 1003
            .|..|:.:|.:|.|.|:    ||...:|
plant   944 AACALFKRMVKEGVRPD----LKTYSVL 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR repeat 142..169 CDD:276811 7/26 (27%)
PLN03218 <163..>261 CDD:215636 28/97 (29%)
PPR repeat 177..204 CDD:276811 8/26 (31%)
PPR repeat 210..239 CDD:276811 8/28 (29%)
PPR_2 213..257 CDD:463778 13/43 (30%)
PPR repeat 245..274 CDD:276811 7/28 (25%)
Pterin_binding <456..>543 CDD:444759 18/96 (19%)
LapB <661..855 CDD:442196 38/203 (19%)
PPR repeat 681..704 CDD:276811 3/22 (14%)
PPR repeat 710..739 CDD:276811 7/34 (21%)
PPR repeat 780..818 CDD:276811 8/39 (21%)
PPR repeat 825..854 CDD:276811 6/28 (21%)
PGR3NP_194913.1 PPR repeat 120..147 CDD:276811
PPR repeat 155..182 CDD:276811
PPR_3 176..236 CDD:316342 1/4 (25%)
PPR repeat 190..217 CDD:276811
PLN03218 <212..631 CDD:215636 103/441 (23%)
PPR repeat 225..252 CDD:276811 5/20 (25%)
PPR repeat 258..287 CDD:276811 6/28 (21%)
PPR repeat 293..320 CDD:276811 4/26 (15%)
PPR repeat 330..357 CDD:276811 7/26 (27%)
PPR repeat 365..392 CDD:276811 8/26 (31%)
PPR repeat 398..427 CDD:276811 8/28 (29%)
PPR repeat 433..462 CDD:276811 7/28 (25%)
PPR repeat 470..497 CDD:276811 5/31 (16%)
PPR repeat 505..532 CDD:276811 8/30 (27%)
PPR repeat 538..567 CDD:276811 7/29 (24%)
PPR repeat 575..602 CDD:276811 11/26 (42%)
PPR repeat 608..637 CDD:276811 3/28 (11%)
PPR_2 641..689 CDD:463778 8/47 (17%)
PPR repeat 643..671 CDD:276811 3/27 (11%)
PPR repeat 755..779 CDD:276811 6/30 (20%)
PLN03218 <774..>1105 CDD:215636 61/352 (17%)
PPR repeat 787..814 CDD:276811 7/45 (16%)
PPR repeat 822..849 CDD:276811 10/58 (17%)
PPR repeat 857..885 CDD:276811 5/27 (19%)
PPR repeat 893..920 CDD:276811 12/124 (10%)
PPR repeat 928..955 CDD:276811 10/26 (38%)
PPR repeat 961..990 CDD:276811 3/7 (43%)
PPR repeat 996..1025 CDD:276811
PPR repeat 1032..1061 CDD:276811
PPR repeat 1067..1094 CDD:276811
Blue background indicates that the domain is not in the aligned region.

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