DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsf and MEE40

DIOPT Version :10

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_190938.1 Gene:MEE40 / 824537 AraportID:AT3G53700 Length:754 Species:Arabidopsis thaliana


Alignment Length:761 Identity:141/761 - (18%)
Similarity:270/761 - (35%) Gaps:254/761 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LVNSVRENETS-------NLLNNAPCMCGQFQNGFATNAAAKAELSLDKQIRRLDQDVRRIGRI- 78
            |::|:|.....       ||.:..|        .|:...|...|:.|            |:||. 
plant    53 LLDSLRSQPDDSAALRLFNLASKKP--------NFSPEPALYEEILL------------RLGRSG 97

  Fly    79 SRRDLEEVLDEIRSHR--TATSSQSLLVIRCCGNLVPEELPEVRTALVQEIW---------KTLN 132
            |..|::::|::::|.|  ..||:..:|:.......:.:|:..|...::.|..         :.||
plant    98 SFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLN 162

  Fly   133 AL-------------------NVPMDISHYNALLRVYLENEHGFAPTDFLAE-IEAKGIEPNRVT 177
            .|                   .:..|:|.:|.|::. |...|...|...:.| :.:.|:.|:..|
plant   163 LLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA-LCRAHQLRPAILMLEDMPSYGLVPDEKT 226

  Fly   178 YQRLIARYCQQGDIEGATRILEFM-----RAKSLPVN---------------------------- 209
            :..::..|.::||::||.||.|.|     ...::.||                            
plant   227 FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF 291

  Fly   210 ---ENVFNSLILGHSQANDLESAKGILGVMMQAGLEPSADTYTTLLCAFARHGDLAAVKETLAE- 270
               :..||:|:.|..:|..::.|..|:.||:|.|.:|...||.:::....:.|::....|.|.: 
plant   292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

  Fly   271 -------------------CEQKEI--------ILLDKDLLDIVYT-------LTVNGNGEHVDD 301
                               |::.::        :|..|.:|..|.|       |.:..|.....:
plant   357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

  Fly   302 VLTKLRLSPGFNQD--AVNVIL-RLVNKGHEDVGLKLLRVMPRSS-------------------- 343
            :..::| |.|...|  ..|::: .|.:||..|..|.:|:.|..|.                    
plant   422 LFEEMR-SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

  Fly   344 -----------RVNG------------------EPVDVGAFFIRQMV-KANRP------------ 366
                       .|:|                  ..|:..|..:.||: :..:|            
plant   486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550

  Fly   367 -----VEKILSICKSLQSEGLNPKALTIAT-EAGLTN-GVINNALPLLQEMKNAGLPIRQHYFWP 424
                 ::|...|.:::.|.|..|..:|..| .:||.. |.:..|..||:.::..|:.:..|.:.|
plant   551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615

  Fly   425 LI----CSAESNQVLEIVRRMQQEFSVFPNSETVRDYVIPNLKEKNWERIVTSLRDAGVPNSTAV 485
            :|    ...::.:.:.:.|.|.::....|::.:.|             .:...|.:.|.|...||
plant   616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYR-------------IVFRGLCNGGGPIREAV 667

  Fly   486 TSAVYSALVTHQIAEAAKIMEKNRAYYVP------FLFKQPLILALSHTNDYASFIRCVRQIHEG 544
            ...|             :::||.   :||      .|.:..|.|::..|     .::.|..:.:.
plant   668 DFLV-------------ELLEKG---FVPEFSSLYMLAEGLLTLSMEET-----LVKLVNMVMQK 711

  Fly   545 LQFRQGKDEEVEQVEGVAAVPTERITPDVVGAIV---QEATTYFRR 587
            .:|   .:|||..|:|:..:...:.....:|.::   |...||..|
plant   712 ARF---SEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYRSR 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR repeat 142..169 CDD:276811 6/27 (22%)
PLN03218 <163..>261 CDD:215636 30/134 (22%)
PPR repeat 177..204 CDD:276811 10/31 (32%)
PPR repeat 210..239 CDD:276811 9/28 (32%)
PPR_2 213..257 CDD:463778 14/43 (33%)
PPR repeat 245..274 CDD:276811 6/48 (13%)
Pterin_binding <456..>543 CDD:444759 15/92 (16%)
LapB <661..855 CDD:442196
PPR repeat 681..704 CDD:276811
PPR repeat 710..739 CDD:276811
PPR repeat 780..818 CDD:276811
PPR repeat 825..854 CDD:276811
MEE40NP_190938.1 PLN03218 <83..>279 CDD:215636 42/208 (20%)
PPR repeat 89..112 CDD:276811 7/34 (21%)
PPR repeat 118..142 CDD:276811 5/23 (22%)
PPR repeat 157..183 CDD:276811 3/25 (12%)
PPR_2 187..234 CDD:463778 11/47 (23%)
PPR repeat 191..218 CDD:276811 6/27 (22%)
PLN03218 <220..>643 CDD:215636 77/423 (18%)
PPR repeat 224..253 CDD:276811 10/28 (36%)
PPR repeat 261..289 CDD:276811 2/27 (7%)
PPR repeat 297..324 CDD:276811 9/26 (35%)
PPR repeat 330..359 CDD:276811 5/28 (18%)
PPR repeat 367..394 CDD:276811 2/26 (8%)
PPR repeat 402..429 CDD:276811 4/27 (15%)
PPR repeat 437..464 CDD:276811 8/26 (31%)
PPR repeat 470..499 CDD:276811 0/28 (0%)
PPR repeat 505..534 CDD:276811 4/28 (14%)
PPR repeat 540..569 CDD:276811 2/28 (7%)
PPR repeat 575..604 CDD:276811 8/28 (29%)
PPR repeat 610..638 CDD:276811 5/27 (19%)
PPR repeat 646..676 CDD:276811 7/55 (13%)
PPR repeat 682..711 CDD:276811 5/33 (15%)
Blue background indicates that the domain is not in the aligned region.

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