DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsf and Lrpprc

DIOPT Version :10

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_001008519.2 Gene:Lrpprc / 313867 RGDID:1306575 Length:1392 Species:Rattus norvegicus


Alignment Length:1417 Identity:412/1417 - (29%)
Similarity:670/1417 - (47%) Gaps:195/1417 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 DKQIRRLDQDVRRIGRISRRDLEEVLDEIRSHRTATSSQSLLVIRCCGNLVPEELPEVRTALVQE 126
            |..:.|||..|||.|||::..|::|.:......:..|:|:||::|.||:|:||.....||....:
  Rat    83 DWALMRLDNSVRRTGRITKGLLQKVFESTCRSGSPGSNQALLLLRSCGSLLPELSLAERTEFAHK 147

  Fly   127 IWKTLNALNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPNRVTYQRLIARYCQQGDI 191
            ||..|..|....|:|||||||:|||:||:.|:||||||::|...|:|||||||||||.||..|||
  Rat   148 IWDKLQQLGTVYDVSHYNALLKVYLQNEYRFSPTDFLAKMEGANIQPNRVTYQRLIAAYCSVGDI 212

  Fly   192 EGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMMQAGLEPSADTYTTLLCAFA 256
            |||::||.||:.:.||:.|.||::|:.||::|.|:|:|:.||.||.|||:||..|||..||.|.|
  Rat   213 EGASKILGFMKTRDLPITEAVFSALVTGHARAGDMENAENILTVMKQAGIEPGPDTYLALLNAHA 277

  Fly   257 RHGDLAAVKETLAECEQKEIILLDKDLLDIVYTLTVNGNGEHVDDVLTKLRLSPGFNQDAVNVIL 321
            ..||:..||:.|.:.|:.:...:|:|.|.|:.:.:..|..::|.::|.|:........||:|:||
  Rat   278 EKGDIDHVKQILEKVEKSDHYFMDRDFLQIIVSFSKAGYPQYVSEILEKITYERRSIPDAMNLIL 342

  Fly   322 RLVNKGHEDVGLKLLRVMPRSSRVNGEPVDVGAFFIRQMVKANRPVEKILSICKSLQSEGLNPKA 386
            .||.:..||...::|..:|.:......  ..|:||:|..|..:.|.||::..||.|:...::..:
  Rat   343 LLVTEKLEDTAFQVLLALPLARDETSS--SFGSFFLRHCVTMDTPAEKLIDYCKRLRDAKVHSSS 405

  Fly   387 LTIATEAGLTNGVINNALPLLQEMKNAGLPIRQHYFWPLICSAESNQ----VLEIVRRMQQEFSV 447
            |.......|.......|..:::.:::.|.|||.||||||:...:..:    :::|::.| :|..|
  Rat   406 LQFTLHCALQANKTALAKAVMEALRDEGFPIRTHYFWPLLVGHQKTKNVQGIIDILKIM-KEMGV 469

  Fly   448 FPNSETVRDYVIPNLKEKNWERIVTSLRDA-----GVPNSTAVTSA-VYSALVTHQIAEAAKIME 506
            .|:.||..:||.|....      |.|.|.|     .:|.||....| |.:..:...:......:|
  Rat   470 DPDQETYINYVFPCFGS------VQSARAALQENKCLPKSTTFAQAEVRNEAINGNLQNILSFLE 528

  Fly   507 KNRAYYVPFLF---KQPLILALSHTNDYASFIRCVRQIHEGLQFRQGKDEEVEQVEGVAAVPTER 568
            .|.   :||.|   :..|||....:.:...:.:....:::       .|...::..|    ||  
  Rat   529 SNA---LPFSFNSLRGSLILGFRRSMNIDLWSKITELLYK-------DDRYCQKPPG----PT-- 577

  Fly   569 ITPDVVGAIVQEATTYFRRDRGATLEKILKGLVKQGLSISSDKATQLSEQLGSELTPKISELLGK 633
                       ||..||       |..::..:....:....::..|...|| .|:..|:||.:.|
  Rat   578 -----------EAVGYF-------LYNLIDSMSDSEVQAKEERLRQYFHQL-REMNVKVSENIYK 623

  Fly   634 LSSGELEPVPLPNSGK-------------RSLDSLSINELERFIVNVEGKGENANNIKRQLLNAC 685
            .....|:...:|...|             |.....:.::||..:..::.:|....:..:||:...
  Rat   624 GICNLLDNYHVPELIKDVKVLVDREKIDSRKTSQFTSSDLESTLEKLKAEGHPVGDPLKQLILLL 688

  Fly   686 FRSQNLEKTLQVIEKLEAEKFQIPVGIYAQLIDLNTHHKKSSEALEIYGKLKAKDATFQLDNLKA 750
            ...:|::|.|:|..|.|::   :.:|.||.||:|...|..:.:||.:..:....|.:..||..|.
  Rat   689 CSEENMQKALEVKAKYESD---MVIGGYAALINLCCRHDNAEDALNLKQEFDRLDPSAVLDTAKY 750

  Fly   751 VRLADLLLQEERVDAAFKILEENK-KEVPVAEAEGSYNYMSTVWRILNSLAEAGQPERLRKLFDV 814
            |.|..:|.:..||..|..||:|.| |:|.:.:|.     :.:.:.|||..|..|:.|.:::|.:.
  Rat   751 VALVKVLGKHGRVQDAINILKEMKEKDVVIKDAA-----VLSFFHILNGAALRGEIETVKQLHEA 810

  Fly   815 LVGANYIVPTNVLLGPLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQK 879
            :|......|::.:..||:.|||.|||:|.|:||.....:|||..|..:::.|:||:|.:...:||
  Rat   811 IVTLGLAKPSSNISFPLVTVHLEKDDLPAALEASIACHEKYKVLPRIHDVLCKLIEKGETDLIQK 875

  Fly   880 LTDLSTGIHGEVNSLYDLVFSFVECGRVRQARKILETPGLRTRPQRINSACDRYKNEGLLQPLEG 944
            ..|..:...||::.||||.|:|::.|..::|:||:||||:|.||.|:...|||......::.||.
  Rat   876 AMDFVSQEQGEMSMLYDLFFAFLQTGNYKEAKKIIETPGIRARPTRLQWFCDRCIANNQVETLEK 940

  Fly   945 LIEATKDLGHIDRNKIYYTLLLSYDKADEAEKALGLWTKMQEENVTPNDAFLLKLAEILSKKNID 1009
            |:|.|:.|...||:::||.||..|..:.:.::|..:|.||||||:.|.:..|..||.||...|.:
  Rat   941 LVELTEKLFECDRDQMYYNLLKLYKISGDWQRADAVWNKMQEENLIPRERTLRLLAGILKTSNQE 1005

  Fly  1010 VPFVVPET---QNEQAKAKKSKAKDATTTE------AATETAKVAEQPKEKAAKKEPAKTETAKP 1065
            |||.|||.   .:..:.:..|.:...|.||      ...:.:|.|.....||.|::...:..|..
  Rat  1006 VPFDVPELWFGDDRSSLSSSSPSAGDTVTEKMLLSDCRLKKSKDAYNIFLKAEKQDVVFSSEAYS 1070

  Fly  1066 PKTASHLS--GFRKAIQANDPDAAISHKQSVLSGEKIGALDTSRLIELLVRADRLTEATKYVEEL 1128
            ......||  .|.:|:...  |.|.:|    :.|..:....:|.||...||.|.|..|.:.::..
  Rat  1071 TLVGLLLSKDDFTRAMHVK--DFAETH----IKGFTLNGAASSLLIIAQVRRDYLKVALETLKAA 1129

  Fly  1129 LGDKLHPQPKIFKFYLNKIAAAGD---LETMQRIGQQLNDEQKRLISFDNRFCHANIVAGKAEEF 1190
            |..:..|........:..:|..||   :||:|::.:.|:..:...:.|.|     ||...:.:  
  Rat  1130 LDLEQVPSELAVTRLIQALALQGDVKSIETIQKMVKGLDAIELSRMVFIN-----NIALAQMK-- 1187

  Fly  1191 LKHLTTEIDAA---------------------------KTPEESTKLAEKFPRGGAVGILEKHPE 1228
                ..|||||                           |..||..:.|           |||   
  Rat  1188 ----NNEIDAAIENIEHMLASENQTVEHQYFGLSYLFRKVIEEQMEPA-----------LEK--- 1234

  Fly  1229 LVPQYQSLAEKFAAHNQLGPMNVLWMHLISTGQEAASKEIWDK--HLSNAPRLMFQRVLQTAREQ 1291
            |....:.||.:||.:.   |:..|::.|:.:|:...::.:.::  .::....::....|:|:::.
  Rat  1235 LSIMSERLANQFALYK---PVTDLFLQLVDSGKVDEARALLERCGAIAEQTSILSVFCLRTSQKP 1296

  Fly  1292 QDEKLASTVISQLKNSKISEGAIGNAYSCLIDIQTTKGNSDKAMVVLANAIKDVSLENINRTALL 1356
            :...:..|::..:...:.::    ..|||          |.|:.|    |.|||:          
  Rat  1297 KKAPVLKTLLELIPELREND----RVYSC----------SMKSYV----ADKDVA---------- 1333

  Fly  1357 RLKQAVEEKSQKFPYT-IPEKRTKADDSSSSSSSSSSDDDVSPSVPETVPPK 1407
                     |.|..|. :..|..|.||......:|.. .||...||.|.||:
  Rat  1334 ---------SAKALYEHLTAKNMKLDDLFLKRYASLL-KDVGEPVPFTEPPE 1375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR repeat 142..169 CDD:276811 19/26 (73%)
PLN03218 <163..>261 CDD:215636 56/97 (58%)
PPR repeat 177..204 CDD:276811 19/26 (73%)
PPR repeat 210..239 CDD:276811 14/28 (50%)
PPR_2 213..257 CDD:463778 23/43 (53%)
PPR repeat 245..274 CDD:276811 13/28 (46%)
Pterin_binding <456..>543 CDD:444759 20/95 (21%)
LapB <661..855 CDD:442196 57/194 (29%)
PPR repeat 681..704 CDD:276811 7/22 (32%)
PPR repeat 710..739 CDD:276811 9/28 (32%)
PPR repeat 780..818 CDD:276811 9/37 (24%)
PPR repeat 825..854 CDD:276811 12/28 (43%)
LrpprcNP_001008519.2 pentatricopeptide repeat 127..159 12/31 (39%)
PPR repeat 128..155 CDD:276811 10/26 (38%)
PPR_3 147..206 CDD:316342 37/58 (64%)
pentatricopeptide repeat 160..195 22/34 (65%)
PPR repeat 163..190 CDD:276811 19/26 (73%)
PLN03218 <187..>296 CDD:215636 59/108 (55%)
pentatricopeptide repeat 196..231 23/34 (68%)
PPR repeat 198..225 CDD:276811 19/26 (73%)
PPR repeat 231..260 CDD:276811 14/28 (50%)
pentatricopeptide repeat 232..264 16/31 (52%)
pentatricopeptide repeat 265..300 13/34 (38%)
PPR repeat 266..295 CDD:276811 13/28 (46%)
PPR repeat 302..326 CDD:276811 6/23 (26%)
pentatricopeptide repeat 436..471 12/35 (34%)
PPR 9 677..708 8/33 (24%)
pentatricopeptide repeat 712..744 9/31 (29%)
PPR repeat 713..739 CDD:276811 8/25 (32%)
PPR repeat 747..776 CDD:276811 11/28 (39%)
pentatricopeptide repeat 748..780 13/31 (42%)
PPR 750..780 CDD:273253 12/29 (41%)
PPR 12 784..820 8/40 (20%)
PPR repeat 785..809 CDD:276811 7/23 (30%)
PPR 13 821..856 15/34 (44%)
pentatricopeptide repeat 955..987 13/31 (42%)
PPR 15 1030..1064 8/33 (24%)
LapB 1046..1309 CDD:442196 59/296 (20%)
PPR 16 1065..1101 9/41 (22%)
PPR repeat 1066..1097 CDD:276811 8/36 (22%)
PPR 17 1102..1136 9/33 (27%)
PPR repeat 1103..1127 CDD:276811 8/23 (35%)
PPR 18 1137..1173 7/35 (20%)
PPR 19 1174..1208 9/44 (20%)
pentatricopeptide repeat 1318..1350 15/64 (23%)

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